Rheinheimera sp. F8: ATY27_14355
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Entry
ATY27_14355 CDS
T09854
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhei
Rheinheimera sp. F8
Brite
KEGG Orthology (KO) [BR:
rhei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhei03019
]
ATY27_14355
Enzymes [BR:
rhei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ATY27_14355
Messenger RNA biogenesis [BR:
rhei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ATY27_14355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
nSTAND3
AAA_22
NACHT
ABC_tran
AAA_23
SLFN-g3_helicase
T2SSE
NTPase_1
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ALZ78007
UniProt:
A0A0U4V5G1
LinkDB
All DBs
Position
3237846..3241685
Genome browser
AA seq
1279 aa
AA seq
DB search
MLDAVAFCLLKDQFRLRRMCRDLAKTADVKRHTQLQADIMLSQQTRQSRAQAMPAVSYPA
ELPVSGRKEDIKAAIAKHQVVIIAGETGSGKTTQIPKICLELGRGIAGLIGHTQPRRLAA
RSVGQRLADELAVPLGQQVGYKVRFGDHTGSNTLVKLMTDGILLAEIQQDKFLNQYDTII
IDEAHERSLNIDFLLGYFKQLLPKRPDLKLIITSATIDPQRFSRHFSDAPVLEVSGRTYP
VEVRYRPATEMDDKDADQLQAIFDAVDELYREPPGDILIFLNGEREIRDTADALEKLKLP
HTEVLPLYARLSAAEQNRIFQSHAGRRIVLSTNVAETSLTVPGIRYVIDPGTARISRYSY
RSKVQQLPIEAISQASANQRKGRCGRVAAGICIRLYSEDDFNNRDEFTDPEILRTNLASV
IMQMLALGLGDIQHFPFLQKPDSRFINDGVRLLDELGALKTERKQGLQLTPLGRQLSRLP
IDPRLARMVLAGAERNCLDELLVITAALSIQDPRERPLDKKQKADELHGRFADPDSDFAS
WLKLWRYLQEQQDSLTNNQFRRLCKQELLNYLRVREWQDLYAQLSQVAEELALKSNSTAA
DYQSIHTAILTGLLGQIGSKDSEADYMGARQSRFFVFPGSHLFKRKPKWVMTAELVETSK
LYARTVAKIEPEWVEPLAQHLVSRSYSEPHWEKKRGAVIAFEQVTLYGLIIVGKRAVQYS
KIEPELCHKIFVREALVNQELGLNEPFLAHNARLIDEVTDLEDKSRRRDILVDEETLVAF
YAEKIPVHANNRIDFQHWWKTQKQQDAKFLNFDPDMLKRHDAGHITDDSYPEFWSQGNLR
LPLEYHFSPGAPDDGVSLCIPLALLNQVQELGFDWLIPGLRHELLVALIKCLPKMYRRNF
VPAPNYADALLQSVSPDDGPLLTTVTQRLKRMSGITIADDAWELSELPVHLKMNFKVTDD
KGSVIAQHRSLAVLKQQLQGQVQETLSLVAEQGIEQQQLTDWSFGELPREYVRLQAGYEI
KAFPALVDQKHSVAIQLLDSPEQAAAQSRLGLRRLMLLNLPSPVKYLQENLPNKAKLGLY
FNPFGKVLELIDDCIAAGIDHLVGQHSWPHNQQEYLQLRDAVRAELGDTVLAVAMQVEQI
LTVGHEISKKLRGRMDLALAYANADIKQQLDALIFKGFVSEFGATRLDDIKRYLLALQKR
LEKLPVDPQRDRLQMHEYEKAADAYQHLLGKFAGKPVPEPVRDIRWMLEELKVSLFAQQL
GTPYPISSKRILLAVQELK
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgcggtggcattttgtctgctcaaagatcagttccgtttacgccggatgtgc
cgggacctggcgaaaacagcagacgtgaagcggcatacgcaattacaagctgacatcatg
ttgtcgcaacaaacccgtcagagcagagcacaggcgatgccagcggtcagctatccggct
gagttgccggtcagcggccggaaagaggacattaaagccgccatagccaaacatcaggtg
gtgattattgccggcgagaccggctccggaaaaaccacacaaattccgaaaatttgtctt
gagcttggtcgtggtattgccggcctgatcggccatacgcagccgagacggctggccgca
cgcagtgttggccaacgtctggccgatgaacttgcagtgccgcttggccagcaagtcggc
tacaaagtgcggtttggcgaccacacgggtagcaatacgctagtgaagctgatgaccgac
ggtattttactggcggaaattcagcaggataaattcctcaatcaatacgacaccatcatt
atcgacgaagcgcacgagcgcagtctgaacattgattttctgctcggctactttaaacag
ttgctgcctaaacggccggatctaaagctgattatcacctcagcgactatagatccacag
cgattttcccggcatttttccgatgcgccggtactggaagtgtcaggccggacttatccg
gtcgaagtgcgctaccggccggcgacggagatggacgataaagatgccgatcagttgcag
gctatttttgatgctgtcgacgaactgtatcgcgagccgccaggtgacattctgattttc
ctcaatggcgagcgcgagatccgggataccgcggatgcgctggaaaaacttaaactgcca
cataccgaagtattgccgttatatgcgcggttaagtgccgccgaacaaaaccgtattttt
cagagccatgcgggacggcgtatcgtgttgtcgactaacgtggcagaaacctctttgaca
gtccccgggatccgttatgtgatagatccaggcactgcgcgcatctcccgctatagctat
cgctcgaaagtgcaacagctgcctattgaagcgattagccaagccagcgcgaatcaacgc
aaaggccgctgtggtcgcgtcgctgccggtatttgtatccgcctgtacagcgaagatgat
ttcaacaaccgggacgaatttaccgatccggagatcctgcgtaccaatctcgcgtctgtg
atcatgcagatgttggcactaggcctcggcgatattcaacattttccgtttctgcaaaaa
ccagacagccggtttattaatgacggcgtgcggttactcgatgaactcggcgcactgaag
actgaacgcaaacaagggctgcagctgacgccgcttggcagacaactaagccgtttgccg
atagatccgcgattagctcggatggtattagccggggcagagcgcaactgtctggatgaa
ttgctggtgatcactgccgcgctgtcgatccaggacccacgcgagcggccactggataaa
aaacaaaaagccgatgaactgcatggtcgttttgctgatccggattcagatttcgccagc
tggctgaaactgtggcgctatttgcaggaacagcaggacagcctgaccaacaatcaattc
cgccggttgtgtaaacaggagctgctgaactacttacgcgtccgcgagtggcaggatctg
tatgcgcagctgtcgcaagtcgctgaagaacttgcactaaaaagtaatagcacagcagca
gactatcaaagcattcataccgctatcctgaccgggttgttgggccaaattggtagcaaa
gacagtgaagcggattacatgggggcgcggcaaagccggttttttgttttccccggcagc
catttatttaagcgcaagccgaaatgggtaatgaccgctgaattagttgaaaccagtaag
ttgtatgccagaactgtggcaaagatcgaacctgaatgggtcgaaccgctggcacaacat
ctggtcagccgtagctacagtgagccacattgggagaaaaaacgcggcgccgtaatagca
tttgagcaagtgacactctatggcctgatcatcgtcggcaaacgcgcagtgcaatacagc
aaaatcgaacctgaactgtgtcacaaaatttttgtccgcgaagcactggtgaatcaggag
ctgggcctgaacgagccatttttggcgcacaatgcccgactgattgacgaagtgactgat
ctcgaggacaaatcgcgccgacgtgacattctggtcgacgaagaaacgctggtcgcgttt
tacgcggagaaaataccggttcacgccaacaatcgcattgactttcagcactggtggaaa
acgcaaaagcaacaagatgcaaagtttctgaactttgatccggatatgcttaaacgccat
gacgccggccacattactgacgacagctatccggagttctggtctcagggcaatctgcga
ttgccgcttgagtatcatttctcgccgggcgctccggatgacggcgtcagtctgtgtatt
ccactggccttactcaatcaggtacaggagcttgggtttgactggttgatccccggtctg
cgccatgaattactggtggcgttgattaaatgtttgccgaagatgtaccggcgtaatttt
gtaccggcaccgaattatgccgacgctttattgcagtcggtgagccctgatgacggtcct
ttattaaccactgtcacgcaacgcttaaaacggatgagtggcattaccatcgctgacgat
gcctgggaactcagtgagttgcctgtgcacttaaaaatgaattttaaagtgactgatgac
aaaggcagcgtcattgcccaacaccggtcgctggccgtgttaaaacaacagctgcagggg
caggtacaggaaaccctgagtctggtggcagaacagggcattgaacaacaacaactgacc
gactggagctttggtgagctaccacgcgagtatgtccggttgcaggctggctatgaaatc
aaagctttcccggcgctggtggatcaaaaacacagtgtggcaatccagctgctggatagc
ccggaacaggccgccgcgcagtcacggctcggcttacgccgcctgatgctgctgaattta
ccatcgccggtaaagtacctgcaggagaatctgccgaataaagccaaattagggctctat
tttaacccgtttggcaaggtgctggagttgattgacgattgtatcgctgccggtattgat
catttggtaggccaacattcgtggccacacaatcaacaggaatatctgcagttgcgggac
gcggttcgggctgagcttggcgataccgtgctcgccgtggccatgcaggtagaacaaatt
ctgacagtggggcatgagatcagtaaaaagctgcgcgggcggatggatttggcgctcgcg
tatgcaaacgctgatattaagcaacagctcgatgcattgatatttaaaggttttgtcagc
gaatttggtgcaacacggctcgatgacatcaaacgctatttgctggcactgcaaaaacgg
ctggagaaactgccagttgatccgcagcgtgaccggctgcagatgcatgaatatgagaaa
gcagctgacgcctaccagcatctattgggcaagtttgccggtaagcctgtgccagaaccg
gtacgggacattcgctggatgctcgaagagctgaaagtatcattgtttgctcagcagctg
ggtacaccatatccaatttcgtcgaagcgcattttgctggcggttcaggagcttaagtag
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integrated database retrieval system
