Rheinheimera sp. F8: ATY27_16015
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Entry
ATY27_16015 CDS
T09854
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
rhei
Rheinheimera sp. F8
Pathway
rhei03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rhei00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
ATY27_16015 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhei03019
]
ATY27_16015 (rnc)
03009 Ribosome biogenesis [BR:
rhei03009
]
ATY27_16015 (rnc)
03036 Chromosome and associated proteins [BR:
rhei03036
]
ATY27_16015 (rnc)
Enzymes [BR:
rhei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
ATY27_16015 (rnc)
Messenger RNA biogenesis [BR:
rhei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATY27_16015 (rnc)
Ribosome biogenesis [BR:
rhei03009
]
Eukaryotic type
90S particles
RNase
ATY27_16015 (rnc)
Prokaryotic type
rRNA processing factors
ATY27_16015 (rnc)
Chromosome and associated proteins [BR:
rhei03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
ATY27_16015 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
DSRM_2
Motif
Other DBs
NCBI-ProteinID:
ALZ77109
LinkDB
All DBs
Position
complement(3613425..3614096)
Genome browser
AA seq
223 aa
AA seq
DB search
MLPPLSKLEKKLGYQFSNSALLEQALTHRSCKGQHNERLEFLGDAILGLVIAEALFQNFP
KTREGDLTRMRASLVKGVTLAEIAKEMEIAQHLRLGPGELKSGGSRRESIQADAVEAVLG
AIYLDAGVEACKERILHWFGSRLHSIEPGVQKDSKTLLQEYLQGRRLALPQYDVVAVEGD
AHDQTFTVRCTVAGREAVQASGSSRRKAEQDCAQAILEQLKHE
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgttacctcctttaagtaaacttgagaaaaagctcggttatcagttcagcaacagcgct
ctgctcgagcaggcgctgacgcaccgcagttgtaaaggccagcacaatgagcggctggag
tttcttggcgatgccatattaggtttggtcatcgctgaggcgttgtttcagaatttcccg
aaaacccgtgaaggcgatttaacccggatgcgggcgtcgttggtcaaaggcgtgacgctg
gctgagatcgcgaaagaaatggaaattgcccagcatttgcggcttggccccggcgagctg
aaaagcggtggttcgcggcgtgagtcaatccaggctgatgcggtggaagccgtgttaggg
gcgatttacctcgatgccggtgtcgaagcctgtaaagaacggattctgcattggttcggc
agccggttacacagcatcgaacccggcgtacaaaaagattcaaaaaccttgttgcaggaa
tacctgcaaggccggcgtctggcgctgccgcagtatgatgtggtggcggtggaaggcgat
gcccatgatcagacctttacagtgcgctgcactgtggccggacgtgaggcggtgcaagcc
agcggcagttcaagacgcaaagccgagcaggattgtgctcaggccatcctggagcaatta
aaacatgaatga
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