Ruminiclostridium herbifermentans: EHE19_001080
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Entry
EHE19_001080 CDS
T07161
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
rher
Ruminiclostridium herbifermentans
Pathway
rher03030
DNA replication
rher03430
Mismatch repair
rher03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rher00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHE19_001080 (holB)
03430 Mismatch repair
EHE19_001080 (holB)
03440 Homologous recombination
EHE19_001080 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rher03032
]
EHE19_001080 (holB)
03400 DNA repair and recombination proteins [BR:
rher03400
]
EHE19_001080 (holB)
Enzymes [BR:
rher01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EHE19_001080 (holB)
DNA replication proteins [BR:
rher03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EHE19_001080 (holB)
DNA repair and recombination proteins [BR:
rher03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EHE19_001080 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
EF-hand_7
Motif
Other DBs
NCBI-ProteinID:
QNU67179
UniProt:
A0A4U7JL05
LinkDB
All DBs
Position
253808..254797
Genome browser
AA seq
329 aa
AA seq
DB search
MLGHQRVLNTLQTAIKSDNISHAYIFEGAKGIGKRETALAFSSMLMCEEKDAPCGRCKTC
QLIQQSSHPDFQEINLDDDKSISVEDIRNILKGIIIRPLYSKYKVFVINNADNMTVQAQN
ALLKSLEEPPGFVVFILTVQSGTAMTPTIRSRCQRIFFNKLSHEELREILKAKYGVIKPE
WDFITSYADGVIGTAIDLVDSPEYLEIRDVILEQAMQLLQSKDTDVYALYELFEKYDDKI
DYILRVILMFLRDLIVYNQTGNFSILINSDKKDMIIKNADINLSSLIKSTRAIWSAKKSL
EVNANFQLTVEVMLMKIQQSMFSPLSEAR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgctaggacaccaaagggtgttgaataccttacaaacagcaataaagagtgataatatc
agccatgcgtatatatttgagggtgctaagggtattgggaaaagagaaactgcgctggct
ttttcttcaatgctgatgtgtgaggagaaagatgcaccatgtggaaggtgtaagacttgt
cagctaattcagcagagttctcatccagatttccaggaaattaatttagatgatgacaag
agtattagcgtggaagatataagaaatatattaaagggaataataataagacccttatat
tctaaatataaagttttcgttataaataatgccgataatatgactgttcaggctcaaaat
gcattgctcaaatcacttgaagaaccaccggggtttgttgtttttatacttactgtacaa
tcgggtacagctatgactcctactattcgttcaagatgtcaaagaatattttttaacaaa
ttaagccatgaggaattaagagaaattcttaaagccaaatatggagttataaagccagaa
tgggattttattacgtcatatgctgatggtgtaataggaacagcaatagatttggttgat
tcaccagagtatttagaaataagagatgtaatattagagcaagccatgcaattgctgcaa
tcaaaggacactgatgtgtatgcactttatgaactatttgagaaatatgatgataagata
gactatatactgcgtgtaatattaatgtttttaagagatttaattgtatataatcaaaca
ggcaactttagtatattgattaattctgacaaaaaagatatgataattaagaatgcggat
attaatctatctagcttgataaaaagcactcgtgcaatttggagtgcaaagaaaagcttg
gaggttaacgcaaatttccagcttacagttgaggtaatgttaatgaaaattcaacagagc
atgttttcaccattaagtgaggcgcgttaa
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