Ruminiclostridium herbifermentans: EHE19_004495
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Entry
EHE19_004495 CDS
T07161
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rher
Ruminiclostridium herbifermentans
Pathway
rher03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rher00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHE19_004495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rher03019
]
EHE19_004495
03009 Ribosome biogenesis [BR:
rher03009
]
EHE19_004495
Enzymes [BR:
rher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EHE19_004495
Messenger RNA biogenesis [BR:
rher03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EHE19_004495
Ribosome biogenesis [BR:
rher03009
]
Prokaryotic type
rRNA helicases
EHE19_004495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QNU67731
UniProt:
A0A4U7JCN6
LinkDB
All DBs
Position
complement(1021053..1022780)
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AA seq
575 aa
AA seq
DB search
MENLSFKDLNLSNELQKAIADMGFEEATPIQSQSITHILDGKDVIGQAQTGTGKTCAFGI
PAVEIINPDSDLIQVLVLCPTRELAIQSSEELKNLLKYKDGIRILPVYGGQPIDRQIMSL
KKRPQIIIGTPGRVMDHMRRKTLKLENLKMVVLDEADEMLNMGFREDIDTILDKVPVERQ
TILFSATMSKEILDITKKYLKNPFHIKIAHKQLTVPLIEQYYLEVKESAKLEVLSRLLDT
NDIKLSLVFCNTKRKVDELKASLQSRGFSAEALHGDMRQEQRDKVMSMFRKGNIDILIAT
DVAARGIDVDDVEAVFNYDLPSDDEYYVHRIGRTGRAGRTGKAFTFVSGREIYKLKDIQR
YTKSTIKFMKPPSINDVEEKKMANILKSLKEKIAKEQIAKYVGQIEKFVEDINADSSESE
SAEQNFVTSLDIAAALLGLYIEETCTQTNKVSEIDDVTEFTSDGDMVRFFINIGSENKIQ
PKHIIESLVASSGLPGKMVGSIDIHDRYSFVEVPKEFAAEVLKSMKNYIIKGKRINIEKS
TARKKSLNPHTPNRNSYSSKRKQSYSNNKHFKKDN
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatttaagttttaaggatctcaacctttcaaatgaactgcaaaaagcaatagca
gatatgggttttgaagaagcaaccccaattcagtctcaatcaattactcatattctagat
ggtaaggatgtaatagggcaagctcagactggaactggaaaaacttgtgcctttggaata
cctgctgttgaaataattaaccctgattcagatttaattcaagtattagtgctttgccct
acaagagaactagcaattcaatcttccgaagaactaaagaacttattaaaatacaaagac
ggcattagaattctgcctgtatatggcggtcaaccaattgatagacaaattatgtctctg
aagaaacgtccacagattataattggaacgcctggtcgagtaatggatcacatgagacgt
aaaacattaaagctggagaacttaaaaatggtggttttggatgaagccgatgaaatgtta
aatatgggcttcagagaagatatagatactattttagacaaggttccagttgaaagacag
acaatactcttttctgcaactatgtctaaagaaattcttgatattacaaaaaaatatctg
aaaaacccttttcatataaaaatagctcacaagcagctaactgtacctcttattgagcaa
tattatcttgaggtaaaggaatctgcaaagcttgaggttttatcaagattacttgacact
aatgacataaaattatcattagtattctgcaatactaaaagaaaagttgacgaactcaaa
gcaagtctgcaatcaagaggcttttctgctgaagctttgcatggagatatgagacaagag
caaagagacaaagtaatgagtatgttcagaaaaggtaatatagatatacttatagctact
gatgttgctgcgagaggtattgacgttgatgatgttgaagctgtatttaactacgattta
cctagcgatgatgaatattatgttcatagaatcggaagaactggaagagctggcagaact
ggtaaagctttcaccttcgtatcaggaagggaaatatataagcttaaggacatacagaga
tacactaagtctaccattaaatttatgaagccacctagtattaatgatgtggaagaaaag
aaaatggctaatatacttaaatctctaaaagaaaaaatagcaaaggaacaaattgcaaaa
tatgtaggtcaaatagagaaatttgttgaagacataaatgcagattcatcagagtctgaa
agcgcagagcaaaacttcgttacatcgctagatattgctgctgcattgttaggtctatat
atagaagaaacttgcactcaaaccaataaagtcagcgagatagatgatgtcacagagttt
acttctgacggtgatatggtaagattctttataaatattggaagtgaaaataaaattcag
cccaaacatataatagaaagccttgttgcttcttcaggtcttcctgggaaaatggtaggc
tctatagatattcacgatagatattcatttgtagaagttccgaaggagtttgcggcagaa
gttctgaaatctatgaaaaattatataattaaaggcaaaagaataaatattgaaaaatct
actgccagaaaaaagagcttaaatccacataccccaaaccggaatagctatagttcaaaa
agaaagcaaagttattccaacaataaacactttaaaaaggataactag
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