Ruminiclostridium herbifermentans: EHE19_008245
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Entry
EHE19_008245 CDS
T07161
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rher
Ruminiclostridium herbifermentans
Brite
KEGG Orthology (KO) [BR:
rher00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rher03032
]
EHE19_008245 (topA)
03400 DNA repair and recombination proteins [BR:
rher03400
]
EHE19_008245 (topA)
Enzymes [BR:
rher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EHE19_008245 (topA)
DNA replication proteins [BR:
rher03032
]
Prokaryotic type
DNA Topoisomerases
EHE19_008245 (topA)
DNA repair and recombination proteins [BR:
rher03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EHE19_008245 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
DNA_ligase_ZBD
PUA_4
Motif
Other DBs
NCBI-ProteinID:
QNU68380
UniProt:
A0A4U7JJH5
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All DBs
Position
1978588..1980936
Genome browser
AA seq
782 aa
AA seq
DB search
MADNLVIVESPGKVKSIGKFLGKGYKVEASIGHIRDLPKSQIGVDIENNFEPKYITIRGK
GDVISKLKKEAKAAKKIYLATDPDREGEAISWHLAHILNIDEGEKCRVTFNEITQNAVKN
ALKQPREIDTNLVDAQQARRVLDRIVGYKISPLLWKKVKKGLSAGRVQSVATKMICDREK
EIEEFTPEEYWTIVSNLEKPKTSPAFEAKFYGTKKEKIELTNGEQVNAILEEIAQSKYIV
QKVKEQEKKRAAAAPFITSTLQQEASRKLGFTTKRTMMVAQQLYEGVEIKGRGSVGLITY
MRTDSTRISEEAQNEARNYINAKYGKEYIPEVPKIYKNKSASQDAHEAIRPSYIDLTPDD
IKDSLSSEQYKVYKLIWSRFIASQMSSAVYDTVNADISVGEYLFKANGSKIKFPGFMVLY
IEGKDDESDDETNTLPQLFEGDELILKGNLPKQHFTQPPPRYTEATLVKSLEERGIGRPS
TYAPTISTILSRGYVIKDKKCLVPTELGKIVNEIMVKHFKDIVNAEFTAQMEDKLDAVAE
GEKAWKDVLEEFYTPFKTVLSEAEESIGNVELPVEVSDIQCEKCGRFMVVKQGRFGKFLA
CPGFPECRNTKAIVEEAGVLCPKCQGKVLIKKTRKGRKYIGCERNPECTFMSWDMPSNEI
CPVCGAFMLQKTSGKKVTLYCSNENCSSNADSAIKNEVVSDKEPTTKKKAATKKSSAAKK
KTAAKKEASTKKKSADKKETTVKKKTAVKKAAEEEKEIEVKKEAAAKKKSTAKKKASTSK
KA
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggctgataacctggttattgtggagtctcctggaaaagtaaaatcaattggaaagttt
ttaggcaaagggtataaggttgaagcatcaatcggacatattagagatttacctaaaagt
cagattggtgtggatattgaaaataattttgaacctaaatatatcactattcggggtaaa
ggtgatgttatttcaaaacttaagaaggaagcaaaggctgcaaagaaaatttatcttgca
actgacccagatcgagagggagaggcgatatcttggcatttagcccatattttaaacata
gatgaaggagagaaatgcagggttacatttaatgaaattacacaaaatgctgtaaaaaat
gcattaaagcagccaagagaaatagatacaaatcttgttgatgcacagcaagcaagacgt
gttttagatagaatagttggttataaaataagtcctttgctttggaaaaaagtgaaaaag
ggattaagtgccggcagagttcaatctgttgcaacaaaaatgatttgtgatagagagaaa
gaaattgaggaatttacaccagaggaatattggacaatagtttctaatttagaaaaaccc
aaaacaagtccggcttttgaggctaagttttatggaaccaaaaaagaaaaaattgagttg
acaaatggtgaacaggttaatgctatcttagaagaaatagcccaaagcaaatatatagtg
caaaaggttaaagagcaggaaaagaaaagggctgcagcagcacctttcatcactagtacc
ttgcagcaagaagcatcaagaaaattgggatttacaacaaaaagaacaatgatggttgca
cagcagctgtatgaaggtgtggaaataaaaggtcgtggttcagtcggacttataacatat
atgagaactgattcaaccagaatatcagaggaagcgcaaaatgaagctagaaattatata
aacgcaaaatatggaaaagagtacattccagaggttcctaagatatataaaaacaaatcg
gcatctcaggacgcacacgaggctatacgtccatcttatatagatttgactccagacgat
ataaaggattctttatcatctgagcaatataaagtttataaactaatttggagcaggttt
attgccagccaaatgtcatctgcggtttatgacactgttaatgcagacatttctgttggt
gagtatttattcaaagccaatggttcaaaaataaaattccctggttttatggtcttatat
attgagggcaaggatgatgagtctgatgatgaaactaatacccttccgcagttatttgaa
ggtgatgaacttatactgaaaggcaacttgccaaaacagcactttactcaaccgcctcct
cgttatacagaggcaacattagtaaaatcacttgaggaaagaggcattggcagacctagt
acttatgctcctacaatatctactattttatctaggggatatgtaattaaagataaaaaa
tgcttggtacctactgaattaggtaagattgtcaatgaaataatggtaaaacactttaaa
gacattgttaatgcggaatttactgcacagatggaggataagcttgatgctgttgcagag
ggagaaaaggcatggaaagatgtattagaagagttttatacaccttttaagacagtgtta
agtgaagctgaagaaagtattggaaatgtagaactgcctgtagaggtttctgacatacag
tgtgaaaagtgcggaagatttatggttgttaagcaggggagatttggtaaattcttggct
tgtccaggatttccggagtgcagaaacacaaaagccattgttgaagaggccggtgtgtta
tgcccaaaatgtcagggaaaggtacttataaagaagacaagaaagggcagaaaatatata
ggctgtgagagaaatccagaatgcactttcatgagttgggatatgcctagtaatgaaatt
tgccctgtctgtggagcatttatgcttcaaaaaacttctggtaaaaaagtgacattgtat
tgcagtaatgagaattgcagtagtaatgctgattctgcaataaaaaatgaagtggtttca
gataaagaaccaacaacaaagaagaaagcagcaacgaaaaaaagttctgctgcaaagaaa
aaaacagcagccaaaaaagaagcttcaacaaaaaagaaatcagcagataaaaaagaaacc
actgtaaagaaaaaaacagcagtaaaaaaagcagctgaagaagaaaaggaaatagaagta
aaaaaagaagccgcagcaaagaaaaaatcaactgcaaaaaagaaagcttcaactagtaaa
aaagcataa
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