KEGG   Ruminiclostridium herbifermentans: EHE19_010060
Entry
EHE19_010060      CDS       T07161                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
rher  Ruminiclostridium herbifermentans
Pathway
rher02024  Quorum sensing
rher03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rher00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EHE19_010060 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    EHE19_010060 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rher03019]
    EHE19_010060 (hfq)
   03036 Chromosome and associated proteins [BR:rher03036]
    EHE19_010060 (hfq)
Messenger RNA biogenesis [BR:rher03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     EHE19_010060 (hfq)
Chromosome and associated proteins [BR:rher03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    EHE19_010060 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: QNU65288
UniProt: A0A4U7JKF7
LinkDB
Position
complement(2453111..2453353)
AA seq 80 aa
MVKSTINLQDIFLNQVRKEHIAVTIYLTNGFQLKGMVKGFDNFTVVLDSDGKQQLVYKHA
ISTITPMKMVNLIFNEQIKE
NT seq 243 nt   +upstreamnt  +downstreamnt
ttggtaaaaagtacgattaacttgcaggacatttttttgaatcaggtcaggaaagagcat
atagctgttacgatatacttaacaaacggatttcagctaaaaggaatggttaagggcttt
gataactttactgttgttttagatagcgatgggaagcagcagttggtttataagcatgca
atatctacaataactcctatgaaaatggtaaacttaatatttaatgaacaaataaaagag
taa

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