KEGG   Ruminiclostridium herbifermentans: EHE19_010800
Entry
EHE19_010800      CDS       T07161                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
  KO
K03086  RNA polymerase primary sigma factor
Organism
rher  Ruminiclostridium herbifermentans
Pathway
rher02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:rher00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    EHE19_010800 (rpoD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rher03021]
    EHE19_010800 (rpoD)
Transcription machinery [BR:rher03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     EHE19_010800 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_1 Sigma70_r1_2 HTH_PafC Exonuc_VII_L
Other DBs
NCBI-ProteinID: QNU65423
UniProt: A0A4U7JMA6
LinkDB
Position
complement(2626685..2627770)
AA seq 361 aa
MKHSQETRKAILKDLIEKGKSKGMLTYKEITDAFDEIEIEPEHIEKIYETLENLGIDVIG
DMEADLQEIQNSDEEEELDISVPEGISIDDPVRMYLKEIGKVPLLSAEEEIELAHRMENG
DIEAKRRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYRRGFKFSTYA
TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPDEIAKEIGMSV
EKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTLLKEQLIDVLDTL
TPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL
D
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgaagcatagtcaggagactagaaaggcaatacttaaggacctaattgaaaagggaaaa
tctaagggtatgcttacctataaagaaattacagatgcttttgatgaaattgaaatagag
ccggagcatatagaaaagatttatgaaacccttgaaaatttaggtattgatgttattggc
gatatggaagctgatttgcaggagattcaaaattctgacgaggaagaagaattagatatt
agtgttccagaaggaattagcattgatgaccctgttagaatgtatcttaaagagattgga
aaagttccccttttatcagcagaagaggaaattgagctggctcatagaatggaaaatggc
gatattgaagcaaaaagaagacttgctgaagcaaatctaagacttgttgttagtattgca
aaaagatatgttggtagaggtatgcaattccttgatcttatccaggaaggaaatctagga
cttattaaagcggttgaaaaatttgattatagaagaggcttcaaattcagtacttatgca
acttggtggataagacaggcaattactagggcaattgctgatcaggctagaactatacgt
attcctgtccatatggtagaaacaataaataaactgattagagtatcaaggcagttatta
caggagttaggcagagagcctcaacctgatgaaatagcaaaagagataggtatgtcagta
gaaaaggttagagaaataatgaagatttctcaggagcctgtgtctcttgagactcctatt
ggagaagaagaagatagtcatttaggggactttataccagatgatgatgctccagcgcct
gcagaagctgctgcatttactttgttaaaggaacagcttatcgatgtacttgatacatta
acaccccgtgaagagaaggtattaagactcagatttggtttggatgatgggcgagcaaga
acgcttgaagaggttggtaaagaatttaatgtaacaagagaacgtattcgtcagatagag
gctaaagctttgagaaagttaagacatcctagcagaagcaagaagctgaaggattattta
gattaa

DBGET integrated database retrieval system