Ruminiclostridium herbifermentans: EHE19_011005
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Entry
EHE19_011005 CDS
T07161
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rher
Ruminiclostridium herbifermentans
Pathway
rher03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rher00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHE19_011005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rher03019
]
EHE19_011005
03400 DNA repair and recombination proteins [BR:
rher03400
]
EHE19_011005
Enzymes [BR:
rher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EHE19_011005
Messenger RNA biogenesis [BR:
rher03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EHE19_011005
DNA repair and recombination proteins [BR:
rher03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EHE19_011005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SWI2_SNF2
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNU65459
UniProt:
A0A4U7JK08
LinkDB
All DBs
Position
complement(2672289..2674388)
Genome browser
AA seq
699 aa
AA seq
DB search
MDKEQLKRIAIECLKEFYGEDATFRDGQLEAIIGVLQGKRALVVQKTGWGKSLIYFLSTK
ILRKEGKGFTLVISPLLALMNNQIESANNFGLNTRTINTNNKDEWEEIYQELRENKVDVL
FIAPEKLDNEEFKKNILNEINSSIGVLVIDEAHCISDWGHDFRPDYRRIINIVKFLPPNV
PLLATTATANDRVVKDVSEQLGNDIIIQRGPLIRESLSIQVIHLNRKEERLAWLIENINK
MHGTGLIYCLTKHDCNLVAGWLKWCGIDAYAYYSGLRKDKIEEKEERLRLEEMFIRNEMK
VLVATTAFGMGIDKPDIGFVIHFQKPGNVVTYYQQIGRAGRAIESADAILLAGNEDDEIT
NYFINTAFPTYKEMDIVVKAIENSDGISIYEIMKEIDIRNKRLENCLKFLVISGDIYKDG
SKYYKSPIPWTPDLAYSESITKIRHYELQRMNDFIKTDDCYMEFIAKELNDSFAKKCNRC
RNCLQKDIYPSSVKRDTIIEALKYIKNEHYTIEARKQWPTGLSVDGKNKINEMYRCENGI
ALSNYGDAGWGREVSKNKYNDGYFSDDLVKASFELLKDFAGQKNIEWITAVSSLRRPELV
RSFAVRLSELLGLPYYDTIIKIADVKQQKELHNSHSQFKNAWDSFEVNNNVHAGNVLLVD
DMVDSRWTFTVCGYKLRKKGAGLVYPFALANTAGSGGQD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggataaagagcaattaaaaagaattgcaattgagtgcctgaaagaattttatggtgaa
gacgcaactttcagagatggtcaattagaagcaattattggggttttacaaggaaagcga
gctttagttgtgcagaaaacaggatggggtaaaagcttgatttattttctgtcaactaaa
atattgcgcaaagaaggaaaaggatttactttagttattagcccattacttgcattaatg
aacaatcagattgaatcggccaataatttcggactaaatacaagaacaataaacacaaat
aataaagatgaatgggaagaaatttatcaagaactgagggagaacaaggttgatgtttta
tttatagcacccgagaaattggataatgaggaatttaaaaagaatatcttaaatgagatt
aatagttcaatcggggtgctggtgattgatgaggcacattgtatctctgattggggacat
gatttcagacctgactatagaagaattataaatattgtaaaatttttgccaccaaatgtt
cctttgctagctactaccgcaacagctaatgatcgtgtggttaaagatgtttcagaacag
ctaggcaatgatataattattcaacgaggtccattgataagagaatctctttcaatacaa
gttatacatttaaatagaaaagaagaaagattggcatggttaattgagaatattaataaa
atgcatggcacgggtttaatttattgtttaacaaagcatgattgcaatttagtagcagga
tggctgaaatggtgcggtattgatgcgtatgcttattactcagggttaaggaaagataaa
attgaggaaaaagaagaacggttacggcttgaagaaatgtttatccgcaatgagatgaaa
gtactagttgcaactactgctttcggtatgggtattgacaagccagatattggatttgta
atacattttcaaaagccaggtaatgttgttacatattatcagcaaataggcagggccgga
agagcaattgagtcagcagatgcaattttacttgctggcaatgaagacgatgaaataact
aattattttattaataccgcatttcctacatataaagaaatggatattgttgtaaaagct
atagagaatagtgatggaatatctatatatgaaattatgaaagaaatagacatacgtaat
aaaagactggaaaactgtttgaagtttttagttataagtggtgatatatataaagatggt
tcaaagtattataagtcacctataccatggactcccgatttagcatatagcgaaagcata
actaagataagacattatgaactgcaaagaatgaatgattttattaaaacagatgattgc
tatatggagttcattgctaaggagctaaatgattcttttgcaaaaaagtgtaaccgatgc
agaaattgtttacaaaaagacatatacccaagttcggttaaaagagatacaattatagag
gcactgaaatatataaaaaatgaacattatacaattgaggcaagaaaacagtggccgact
ggattatctgtagatggtaagaataaaattaatgaaatgtataggtgcgagaatggaatt
gcactaagtaattatggagatgctggctggggtagagaagttagtaaaaacaaatataac
gacggatatttttcagatgatttagtaaaagcttcttttgaactgctaaaagattttgca
gggcaaaaaaatattgagtggataactgctgtctcttcacttagaagaccagagttagtt
agaagctttgctgtaaggttatctgaattacttggattaccatattatgatacaattatt
aagattgcagatgttaagcaacaaaaagaacttcataatagtcatagtcaatttaaaaat
gcttgggacagctttgaagtaaataataatgttcatgccggtaatgtattattagttgat
gatatggtagattcaagatggacatttaccgtatgtggatataaacttagaaaaaaggga
gcagggcttgtatatccgtttgcattagcaaatacagcaggctcaggaggacaagattaa
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