Ruminiclostridium herbifermentans: EHE19_014120
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Entry
EHE19_014120 CDS
T07161
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rher
Ruminiclostridium herbifermentans
Pathway
rher03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rher00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHE19_014120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rher03019
]
EHE19_014120
03009 Ribosome biogenesis [BR:
rher03009
]
EHE19_014120
Enzymes [BR:
rher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EHE19_014120
Messenger RNA biogenesis [BR:
rher03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EHE19_014120
Ribosome biogenesis [BR:
rher03009
]
Prokaryotic type
rRNA helicases
EHE19_014120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNU66011
UniProt:
A0A4U7JHD4
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All DBs
Position
3515419..3517101
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AA seq
560 aa
AA seq
DB search
MNTSFSELGISPPILKALEEMGFEAPTEVQKRAIPHILNKEDLIVMSKTGSGKTAVFGVP
MLQLTDSKALEPQGLILTPTRELAVQIDNDIKHYSKYLSHRTTAVYGQHNINIEIQALAK
GASIVTGTPGRVFDHIQQGNLKTKHIGFLVLDEADRMLDMGFLDQVVKIIKTIPKDRVTL
LFSATMPHEMHKICRNYMKNPVTIEIESQTMTVDTISQVYYRVNDNEKNIQLNRLLMLER
PESCIIFCNTRFAVDKVQSFLSRKGYSCHALHGDIPQARRLKTIQQFKAGAFPLLVATDV
AARGIHVESLSLVINYDIPQDKDNYVHRIGRTGRAGNDGRALSLVTSDDIMTLYEIEEHI
GTMIPEEELPSEDVLNEQKVQCDEWIKSVSHKSKTAPRLNNDGLIKENRKKLSRTASGTS
TRTAQNKYSHDKSKQPFDKKSNNKSKSNEQSNLTHNEFDRSQKSQRKANSNKQTAFADKT
IDIAPAIQSSTGKTATRKVIRSKTVSTKGRIGTPDSKAAAIANTQSAQSVHGHSAAAQSK
TTQPNKKPLLKRIMQRLFGK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgagttttagtgaattgggcatatcgcccccaatattaaaagccttagaagaa
atgggatttgaagcacctactgaagtacaaaaaagagcaatacctcatatacttaacaaa
gaagatttaattgtaatgtccaagacaggcagcggaaaaaccgctgtttttggcgttccc
atgctgcagctgactgatagcaaggctttagagccacaaggtttgattcttactcctaca
agagaattagccgtacaaatagacaatgatattaagcattactcaaagtatttgtcacac
agaacaacagcagtgtacggacagcataatataaacattgaaattcaagctttagcaaag
ggtgcttctattgttaccggaactccgggacgtgtatttgatcacatacagcaaggcaat
ttaaagacaaagcatataggctttttagtacttgacgaagctgacaggatgcttgatatg
ggctttcttgatcaggttgtaaaaattattaaaactattcctaaagacagggttaccttg
ctattctctgcaacaatgcctcacgagatgcataaaatatgcagaaactatatgaaaaat
cctgtgacaattgaaattgagtcacagaccatgactgtagatactattagtcaggtatat
tatcgtgtaaatgataatgaaaaaaacatacaattaaaccgcctgcttatgctggaaaga
cctgaaagctgcataattttttgtaatactcgttttgcagttgacaaagtacaaagcttt
ttatcacgaaagggctattcatgccatgcattacatggtgatattccacaggcaagacgt
ctaaaaactatacaacagttcaaggctggtgcgtttcctctattagtagctactgatgtt
gcagcacgtggtattcatgttgagagtttatcattagtcatcaattatgatattcctcaa
gacaaggacaattatgtacatagaataggcagaacaggcagagctggaaatgatggtcgt
gctctcagcttggttacaagtgacgatattatgaccttatatgaaattgaagagcacatt
ggaactatgattcccgaggaagaactgccatcagaggatgtcttaaatgagcaaaaggtt
caatgtgatgaatggattaaatctgtttcacacaagagtaaaacagctcctcgcttaaat
aatgatggccttatcaaagaaaaccgcaagaagctgtctcgaactgcatcaggtactagt
acaagaactgctcaaaataagtactcccacgacaaaagcaaacagccctttgataagaaa
agcaataataaatctaagagcaatgaacagagtaatttaactcataatgaatttgataga
agtcaaaaatcacagcgtaaagctaattccaataagcaaacagcttttgctgacaagact
attgatattgctcctgcaatacagagttctactggcaagactgcaactagaaaagtaatt
cgcagtaaaacagtcagcacaaaaggacgtataggaacgcctgacagtaaagctgctgct
attgcaaatactcagtcagcacagtcagtacatgggcactcagctgctgcacaaagcaaa
acaacccagccaaacaaaaagcctctactcaaacgtattatgcagcgtttgtttgggaag
taa
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