Ruminiclostridium herbifermentans: EHE19_018405
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Entry
EHE19_018405 CDS
T07161
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rher
Ruminiclostridium herbifermentans
Pathway
rher03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rher00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHE19_018405 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rher03021
]
EHE19_018405 (rho)
03019 Messenger RNA biogenesis [BR:
rher03019
]
EHE19_018405 (rho)
Transcription machinery [BR:
rher03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EHE19_018405 (rho)
Messenger RNA biogenesis [BR:
rher03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EHE19_018405 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA
Mor
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QNU66781
UniProt:
A0A4V6EQ42
LinkDB
All DBs
Position
complement(4521265..4523526)
Genome browser
AA seq
753 aa
AA seq
DB search
MEQVNLQSKTLEDLRYIAKMMGMKNISKLKKSELLDLLVKSTSEINSEDVQKNKKDTSKG
TSKDTFNESSQIEPNNKIETNTVTAADSNNNEANEEQPVQEPVLRKSRRGRPSSASKLEK
QLEASSKTSGVQDSKSGDLDNKSANQENTSELKEKISTPDSLTEITEKTDAEISEQAQTN
PELDTTTVGIETDNKQSAKADKLPERLKHIGTKSAEEKPSEEDSKVQSRVHTQKATKLQT
PAIGVDEKPQRIGNKPLTSSTPPKTETQPNGQQPYSQTKRTPPMRQQPQLYTQENGQQPS
IQSVQQSPLSTEPNGQQIQPLIQQNGQQSQLPLQQNGSQSQLASLQNGQQSPLPLPQNVQ
QVQPPFQPNVQQTTEKIESDDPVEGVLEVLPDGYGFLRSDNYLSGPKDVYVSPSQIRRFG
LKTGDKLRGKGRIPKEGEKFQALLYVQSINGDTPDIASKRVPFEYLTPIYPDKRITLETT
PREFSTRLIDLIAPIGKGQRGMIVSPPKAGKTILLKKIANSITVNYPEIELIVLLIDERP
EEVTDMQRSIKGEVIYSTFDEVPEHHIKVAEMVLERAQRLVEQKKDVVILLDSITRLARA
YNLTIPPTGRTLSGGLDPGALHKPKKFFGAARNIEFGGSLTIMATALIETGSRMDDVIFE
EFKGTGNMELHLDRKLSEKRIFPAIDINKSGTRREELLLSQKELESVWAIRKAMSNMGTA
EVTEVLINKLMQTRTNDDFVNSIKLSFLDKNNS
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggttaatttacaatcaaaaaccctagaagatttgcgatatattgcaaagatg
atgggtatgaaaaatatatctaaattaaaaaagagcgaacttcttgatttattggtcaaa
agtactagtgaaatcaattcagaagatgttcagaagaataaaaaagatacttccaaaggt
acttccaaagataccttcaatgaaagttcacaaattgagccaaataacaaaattgaaact
aatacagttactgcagctgattctaataataatgaagcaaatgaagagcaaccagtccaa
gaacctgttttaagaaaatcaagaagaggaaggcctagtagcgcttcaaaattggaaaag
cagttagaagctagcagcaaaacttctggtgttcaagatagtaagtcaggtgatttagac
aataaatcagctaatcaagaaaatacgtcagaattaaaagagaagatttcaacaccagac
tcattaacggaaataactgagaaaactgatgcagaaataagcgagcaagcacaaacaaat
ccagaattggatacaactacggtaggtatagaaactgataataaacagagcgctaaggca
gataagttaccagaaagattaaagcatattggaacaaagagtgctgaagagaaaccttcc
gaagaagatagtaaagtacaaagcagagtacatactcaaaaggctacaaaacttcagaca
ccagcaataggcgttgatgaaaagcctcagagaattgggaataaacctctgacaagttct
acaccaccaaaaactgaaacacagccaaatgggcagcaaccttattctcaaactaaaagg
acaccaccaatgcggcagcaaccgcaattgtatacccaagagaatggtcagcagccatct
atacagagtgtacagcaatcaccattgtcgactgaaccgaatgggcagcagattcagcca
cttattcaacaaaatggacaacaatcacaattgccgctacaacaaaatggatcgcaatct
cagttggcatctctacagaacggacaacagtcaccgttgccgcttccacagaatgtacag
caggtacaaccgccatttcagccaaatgtacagcaaacaactgaaaaaatagaaagcgat
gaccctgtagaaggagttcttgaagttttaccagatgggtacggatttttacgtagtgat
aactatttatccggaccgaaggatgtttatgtttctccttcacaaatacgaagatttgga
cttaaaacaggtgacaagcttcgcggtaagggcaggatacctaaagaaggggagaaattt
caggcattactctatgtgcaatcaattaatggagatacccctgatattgcttctaaaaga
gttccatttgaatatttaaccccaatttatcctgataagagaattacgttggagacaaca
ccaagagagttttcaacaagactcatagatcttattgctcctataggaaaaggacaaaga
ggtatgattgtatcacctccaaaggctggtaaaacaatacttcttaagaaaatagctaat
tcaataacagtaaattatcctgaaatagagttaattgtattgcttattgatgaacgacca
gaagaagttactgacatgcagaggtcaataaagggagaagtaatttattcaacctttgat
gaggttccagaacatcacataaaggttgctgagatggtattagaaagagctcagaggctt
gttgagcaaaagaaagatgttgtaattttacttgatagtattactcgattagcaagagca
tacaatctcaccatacctccaactggtagaactttatctggtggtttagatcctggagcc
ttgcataagcccaaaaaattctttggagcagctagaaacattgaatttggcggaagctta
acaataatggcaacagctcttattgaaacaggaagcagaatggatgatgttatttttgag
gaattcaagggaacaggtaatatggaacttcaccttgacagaaaactatctgagaagaga
atcttccctgctattgatattaataaatcaggtaccagaagagaagaactgctgctaagt
cagaaagaattagaaagtgtatgggctattagaaaagcaatgagtaatatgggcactgct
gaggttactgaagtgttgataaataagcttatgcagacaagaactaatgatgactttgta
aatagtataaaattatctttccttgataaaaataattcatag
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