Rodentibacter caecimuris: FEE42_02645
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Entry
FEE42_02645 CDS
T06473
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rhey
Rodentibacter caecimuris
Pathway
rhey03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FEE42_02645 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhey03400
]
FEE42_02645 (recB)
Enzymes [BR:
rhey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FEE42_02645 (recB)
DNA repair and recombination proteins [BR:
rhey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FEE42_02645 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
AAA_30
AAA_11
DUF4404
ResIII
SocA_Panacea
AAA_25
PRCC
DUF4358
Motif
Other DBs
NCBI-ProteinID:
QIA76329
LinkDB
All DBs
Position
complement(524109..527735)
Genome browser
AA seq
1208 aa
AA seq
DB search
MTKSTPLDPVTLPLNQINLIEASAGTGKTYTIGSLYLRLLLQAGEQNFSRPLNVEEILVV
TFTEMATEELKQKIRERITDAIQKLSAYAETKTESAFKNDEFLTALSRHINDLTLAIQRL
KLAEQNMDLAAIFTIHGFCRRMLMQYAFHSGVHFNLELVKDQSDLLKQFANEFWREHFYP
QPFEIANFIAQEFISPDSVLAVLKNDIGKDFDAELENADLLTLSLERLFKKVAEQRHILD
KLKQTWQENEPEIKDFIAQELQNKRLNGNKYRSNNLPGYYARVAAWAKNTTDHSLSEDII
KYFTQSALNANAAKEKQPNSSPILEKLDRLAEEFQQTISPELLYKLILYHYRQGIQQKLL
EYQLNHQEKSFDDLLRLLCEALQQAQGDQLAEMIRFQYPFAMIDEFQDTDAQQYAIFSTI
YREKPTKNSGFIMIGDPKQAIYRFRGADIFTYLKAAAQADERFSLMKNYRSEQRVVEGVN
RLFDFPNSPFIYHNIEFTPVNARTDHRQFYLNGEQEPAYRFYLNEGEKTDKTALARTCAV
SIQHWIKSAVENQAVFKGLGDLQESKILQAADIAVLVRDKNEAALVKTALQQLGIASVYL
SDQNSVFDSRVAKELVLVLKACLNVTERSILNAIATTLFGLSATEIHQIHHNEQDWQRWA
DGFAQYRQTWQQQGVLPMLHRLLLEQKIAERLLGLASGERDLTDFLHLSEILQQASTLND
SEAALLSWFEKQIQEAIRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLAVPSRDP
TKSAKKEINLYYSKEREGMLWDMENQHSTLINQETFAEELRLLYVALTRAKYQMAFALPT
QFEKKWNPLLYVLTQGEIGENPVLSQSYLTAPLLETFVSQMSGGVLIESAEKLNKLPPLV
LSHHEDGLSVAEFYGEIEQNWRVTSFTGIEQAHRWKDYLNESAVKNSSVFDETKDYDTQL
ISENSAEISTALSDEKRQIVSELPRGTHVGTLLHRYLEKNEFNALSNVATIEKLCQELQL
DESYTPSLQQWFEDIVQTPLSESVNLTLNALDKSDYIKEMAFYLAIRDRFDVAAFNRTLK
RHHHLSSEALQFEDIQGMVRGTIDLVFRYQDKYYLLDYKSNFLGDKPRDYASDNLEKTML
HHHYDWQYLLYTLALHRYLKTADRNYDYARHFGGVFYLFLRGMNGETQSGIFFDRPEMQL
ISELEEIF
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatcaacgcctcttgaccccgtcactttacccttaaaccaaatcaatttaatc
gaagcctcagccggtacgggaaaaacctataccatcggttctttatacctcagacttttg
ctgcaagcgggagaacagaatttctcacgcccgttgaatgtggaagaaattttggtggta
acttttacggaaatggcgacagaagagctgaagcaaaaaatccgtgaacgcattacggat
gccattcaaaaattgtctgcttatgcagaaacaaaaacggaaagtgcgtttaaaaatgac
gaatttctgaccgcactttctcgacatatcaatgaccttacacttgccattcagcgttta
aaattagcggaacaaaatatggatcttgccgctattttcacaattcatggcttctgtcgc
cgaatgctgatgcaatacgcttttcattccggcgttcattttaatttggaattggtgaaa
gatcagtcggatttattgaaacaatttgccaatgaattttggcgtgaacatttttacccg
cagccctttgaaattgccaattttattgcgcaagaattcatatcaccggatagcgtatta
gcggtgcttaaaaatgatatcggaaaagatttcgatgcggaattggaaaatgccgatctg
ctaaccttgtctcttgaaaggctttttaagaaagtggcggagcaacgtcatatccttgat
aaattaaaacaaacatggcaagaaaatgagccggaaattaaggatttcattgcacaagaa
cttcaaaataagcgattaaacggcaataaatataggtctaacaatttacccggttattat
gcacgggtagcggcttgggcaaagaatacaacggatcattcattaagcgaagatattata
aaatattttacgcaatctgcgctgaatgccaacgcggcaaaggaaaaacagcctaatagt
tcccccattttagaaaaattggatcgtttggctgaagaatttcaacaaactatttctccc
gaattattgtacaaacttattctttaccattatcgccaaggtattcagcagaaactgctt
gagtatcaacttaaccatcaagaaaaatcctttgatgatttattgcgattgctttgtgaa
gccctacaacaagcacaaggcgatcaattggcggaaatgatccgttttcaatatcctttt
gccatgattgatgaatttcaggatacggatgcacaacaatacgcgattttctcaacgatt
tatcgtgaaaaaccgactaaaaatagcggtttcattatgattggtgatcctaaacaggcg
atatatcgtttccgtggtgcggatatttttacttatctgaaagctgctgctcaggcagat
gaacgtttcagcttaatgaaaaattaccgctcggaacaacgggtggtggaaggcgtaaac
agattattcgattttcctaactcgccgtttatttatcacaatattgaatttaccccggtt
aatgcaagaacggatcatcgtcaattttatttaaatggcgaacaagagccggcttatcgc
ttttatttaaatgagggtgaaaaaacggataaaacggcacttgcccgcacctgtgccgtt
tctattcaacattggataaaaagtgcggttgaaaatcaggctgtttttaaagggctggga
gacctacaggagagcaaaattttacaagcagcggatatcgccgtattggtgcgtgataaa
aatgaagctgcattggttaaaacagcattgcagcagttgggcattgcttctgtttattta
tccgatcaaaacagcgtttttgacagtcgggtcgccaaagaattagtacttgttttgaaa
gcctgtttgaatgtaacggaacgttctattttaaatgctatcgctaccacgctttttggt
ttaagtgccacagaaattcatcaaattcatcataacgaacaagattggcaacgttgggca
gacggttttgcgcagtaccgacaaacttggcagcagcaaggggtattgccaatgctgcat
cgacttttacttgaacaaaaaattgccgagcgtttgctcgggttggcgagcggtgagcgt
gatttaacggattttttacatcttagcgaaattttacagcaggcttcgaccttaaatgat
agtgaggcggctttattgagttggtttgaaaaacaaattcaagaagcaatccggcaagaa
gcgcaaattcgtttggaaagcgagcgtcagctggtgaaaattgtaacgattcataaatcc
aaagggttggaatatgatttggtatggttaccgtttttagccgtgccgagccgtgatccg
acaaaatccgcgaaaaaagagatcaatctctattactcaaaagagcgggaggggatgttg
tgggatatggaaaatcagcattcgaccttgattaatcaagaaacctttgcggaagaactg
cgtttgctctacgtggcattaactcgggcaaaatatcaaatggcgttcgctttaccgaca
caatttgagaaaaaatggaatccgttactttatgtgctaacccaaggggaaatcggcgag
aatccggtgttgtcgcaaagctatctcaccgcaccgttgctcgaaacattcgtcagtcaa
atgtctggtggagtattgattgaatcggcagaaaaattaaataaattgccgcctttggtt
ttatctcatcacgaagacgggctttcggttgcggaattttacggtgaaatcgaacaaaat
tggcgggtaacgagttttaccggaattgaacaggcacaccgttggaaagattatcttaat
gaaagtgcggtgaaaaattcctctgtttttgatgaaacaaaagattacgatacacaactc
atatcggaaaattctgctgaaatatcaaccgcactttctgatgaaaaaagacaaattgtt
tctgagcttccacgtggtacgcacgttggtacattgctccatcggtatttagaaaaaaat
gaatttaatgcgctgagtaatgtggcaacaatagaaaaactctgccaagaattacaatta
gacgaatcctatactccttctttacagcaatggtttgaagacatcgtgcaaacgccgttg
tccgaatccgttaatttgacactaaatgcgttagacaagagcgattacattaaagaaatg
gcgttttatttggctattcgtgatcgttttgatgtcgccgcctttaatcggacattaaaa
agacaccatcatttatcgagtgaggcgctacagtttgaggatattcaaggcatggtacgg
ggcacaattgatttagtgtttcgctatcaggataagtattatttgctggattataaatcc
aattttcttggcgataaaccacgtgattatgcctcggacaacttagaaaaaacgatgtta
catcaccattatgattggcaatatttactctatacattggcattgcaccgttatttaaaa
acagcggatcgcaactatgattatgcgcgtcattttggcggtgtattttatcttttccta
cgaggtatgaacggagaaacccaatccggcatatttttcgatcgtcccgagatgcaactc
atctctgaattagaggagatcttttga
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