Rodentibacter caecimuris: FEE42_02970
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Entry
FEE42_02970 CDS
T06473
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhey
Rodentibacter caecimuris
Pathway
rhey03410
Base excision repair
rhey03430
Mismatch repair
rhey03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FEE42_02970 (recJ)
03430 Mismatch repair
FEE42_02970 (recJ)
03440 Homologous recombination
FEE42_02970 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhey03400
]
FEE42_02970 (recJ)
DNA repair and recombination proteins [BR:
rhey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FEE42_02970 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FEE42_02970 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FEE42_02970 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
dCache_1_like
PGM_PMM_I
MCM5_C
Motif
Other DBs
NCBI-ProteinID:
QIA76390
LinkDB
All DBs
Position
complement(592612..594339)
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AA seq
575 aa
AA seq
DB search
MNKLIKRREIPIGGSVSEHPLLDRLYRARHIKNRQELDRTLKSMLNPNQLYGITQAVALL
VSAYQTQQKIVIVGDFDADGATSTALAILALRQLGFTNIDYLVPNRFEQGYGLSTPVAEM
AIEKGVQLLMTVDNGVSSFDGITFLKEKGIRVLVTDHHLPPDRLPPADAIVNPNLNQCDF
PSKSLAGVGVAFYLMLALRAKFRELGIFTAENQPNFTELLDLVALGTIADVVPLDQNNRI
LAYQGLMRIRAKYCRLGIIALAEVANRNVEQFSASDLGFSIGPRLNAAGRLDNMSIGVEL
LLAEDMQTARELALELDQLNQTRKEIEAGMKLEALEICRNLTALFNALPTGIVLYQADWH
QGVLGIVSSRIKDQYHRPVIAFAQDEKGVLRGSARSIEGVHIRDLLERIHSQYPDMILKF
GGHAMAAGLSIREECFSQFQQIFNQTVLDWLDETHLQGIIWTDGELGTNEFTLETAELLK
NGGPWGQAFAEPCFDGEFKILDQRAIGQGQNHLKMLVEPKQGGPLLDAIAFNVDTRLYPD
LSIKRARLAYKLDINEFRGNRNIQLLVEHIEPIDE
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaactcattaaacgccgtgaaatcccaatcggaggttctgtttccgaacatcct
ttattggatcgcctttatcgtgcccgtcatattaaaaacaggcaagaattagaccgcact
ttaaaatctatgttaaatccgaatcagctttatggcattactcaggcggttgcattgttg
gtgtcggcttatcaaacccaacaaaaaattgtcattgtgggggattttgatgctgacggg
gcaacaagtacggcattagcgatattagcacttcgtcagcttggttttacgaatattgat
tatttggtgccaaatcgctttgaacaaggttatggattgagtactcccgtagctgagatg
gcgattgaaaaaggcgtgcaattactcatgacagtggataatggtgtatcttcttttgac
ggaattacttttttgaaagaaaaaggaattcgggttttagtgacagatcatcatctgcct
ccggatagactgccaccggctgatgctattgtgaaccctaacttaaatcaatgtgatttt
ccttcaaaatccttggctggcgtaggggtcgcattttatttgatgctggcgctacgggcg
aaatttcgtgagttgggtatttttacggcggaaaaccaacctaattttacagaactgtta
gacctcgtagcgcttggtacgattgctgatgtcgtgccgcttgatcagaataatcgtatt
ttagcttatcaaggtttaatgcgtattcgggctaaatattgtcgactggggattattgct
ttagcggaagtagcgaatcgtaatgttgagcagttttcagcaagcgatcttggcttttct
attggccctcgtctaaatgcggcggggcgattggataatatgtctattggcgtggaatta
ttacttgcggaagatatgcaaactgcgcgtgaacttgctttggaacttgatcaacttaat
caaacacgcaaagaaattgaagcgggaatgaaacttgaggcactggaaatttgccgaaat
ctcaccgcactttttaatgccttgccaacaggtatcgtgctttatcaagcggattggcat
caaggtgtgttaggcatcgtttcgtctcgcattaaagatcagtatcatcgtccggttatt
gcttttgcgcaagatgaaaaaggagtattgagaggttctgcccgctctattgaaggggta
catatccgtgatctattagaacgaattcattctcaatatcccgatatgatcttaaaattt
ggtggacatgcaatggcggccggtttaagtattcgtgaagaatgttttagccaatttcaa
caaatttttaatcaaacagtgctagattggttggatgaaacgcatttacaaggcataatt
tggacagatggcgaattaggaacgaatgaattcacccttgaaacggcggaattgttaaaa
aatggtggtccttgggggcaggcatttgccgagccttgctttgacggtgaatttaaaatt
ttggatcaacgtgcaattgggcaagggcaaaatcacttaaaaatgttggttgaaccgaaa
cagggcggcccacttttagatgccattgcctttaatgttgatacccgactgtatcccgat
ttatccattaaacgggcccgtttagcctataaactggatataaatgaatttcgtggtaat
cgtaacatccaattattagtcgagcatattgaacccatagatgagtaa
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