Rodentibacter caecimuris: FEE42_03435
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Entry
FEE42_03435 CDS
T06473
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rhey
Rodentibacter caecimuris
Brite
KEGG Orthology (KO) [BR:
rhey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhey03016
]
FEE42_03435 (rnd)
Enzymes [BR:
rhey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FEE42_03435 (rnd)
Transfer RNA biogenesis [BR:
rhey03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FEE42_03435 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QIA76478
LinkDB
All DBs
Position
complement(692306..693460)
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AA seq
384 aa
AA seq
DB search
MIKECQEPLHFSLITTNQELSEICQLARQKSAVALDTEFVRVSTYFPKLGLIQLYDGENV
SLIDPLSISDFSPFVELLADPDVLKVLHSCSEDLVVFLQEFDQLPQPMIDTQIMARFLGL
GNSVGLAKLALNYLNIKVDKGATRTNWIKRPLSENQLHYAAGDVWYLLPIYSCLQKELVA
TPWQSAVQADCELALSKIKKLQTRDVESAYLDIPNSWKLNPLELARLKILAQWRQEVAME
RNLALSYVVKSENLWKVAKYNPRNTSEMLEIGLSNNEVRVRGKKILQLLAKARRVSPYDY
PKRIVRIADDPRYKKAIRLLQEKAYELTPQGLTLEILASKRSLEELIKWVWLHDESPDKL
PDLLVGWRREIGLQLLALLKSIEF
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagaatgccaagaaccattgcatttttcattgatcacaacaaatcaggagctg
agtgaaatttgtcaattagcacgccaaaaaagtgcggttgctttagacactgaatttgtg
cgggtatcgacttattttccgaaattgggtctgattcaactttatgacggggaaaatgtt
tctctgattgaccctttaagcatcagcgatttttcgccttttgttgaattattggctgat
cctgatgtgcttaaagtgctccattcttgtagcgaagatttagttgttttcttacaggaa
tttgatcaattgccccaaccaatgattgatacgcaaataatggcacgtttccttggatta
ggaaattcagtgggattggcaaaattggcactaaattatttaaatatcaaagtggacaag
ggggcgaccagaacaaattggattaaacgccctttatcggaaaaccaactgcattatgcc
gcaggcgatgtgtggtatttgttgccgatttactcttgtttacaaaaagagctggtggca
acgccttggcaaagtgctgtgcaggcagactgtgaacttgctttatcaaaaatcaaaaaa
ctgcaaacacgtgatgtggaaagtgcttatttagacattccaaattcatggaaacttaat
ccattggaacttgcccgattaaaaattttggcacaatggcgacaagaagtggcaatggaa
cgtaatttggcgctttcttatgtagttaaatcagaaaacttatggaaagtggcaaaatat
aatccgcgtaatacgtcggaaatgcttgaaatagggctttccaataatgaagtaagagta
cgtggtaagaaaattttacaactcttagcaaaggcacgtcgggtatcaccttatgattat
ccgaagcggatcgtgcgtattgccgatgatccccgttataaaaaggcaattcgcctctta
caagaaaaagcgtatgagctaacgcctcaaggattaacattagaaattttagcgagtaaa
cgaagtttggaagaattaatcaaatgggtttggctacacgatgaatcaccggataaatta
ccggatttattagttggttggcgtagagaaattggattacagcttttggctttattgaaa
tcgatagaattttaa
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