Rodentibacter caecimuris: FEE42_05905
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Entry
FEE42_05905 CDS
T06473
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
rhey
Rodentibacter caecimuris
Pathway
rhey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FEE42_05905 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhey03019
]
FEE42_05905 (rhlB)
Enzymes [BR:
rhey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FEE42_05905 (rhlB)
Messenger RNA biogenesis [BR:
rhey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FEE42_05905 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIA76918
LinkDB
All DBs
Position
1159693..1160949
Genome browser
AA seq
418 aa
AA seq
DB search
MISMQQDYLSQQRFTDFPLHPIVLKALQIKGFEYCTPIQALSLPISLQGKDIAGQAQTGT
GKTIAFLTTTFHHLLAYQKDKTDYNQPRALILAPTRELAVQISNDAEFLANASGLKTALA
YGGDGYDKQLQAIERGVDILIGTTGRIIDYVKQGTIRLEQIQVVVLDEADRMFDLGFIRD
IRYLLRKCPSPQKRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYP
SNQDKMALLLTLIEEEWPERCIVFANTKHRCEEIWRYLAADGHRVGLLTGDVAQKKRLTL
LKQFTDGVLDILVATDVAARGLHIADVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSIS
FACEEYAMNLPAIEEYIGHSIPVSQYDQNSLLSLPKPLPLKSRSNNSRVPLRNRVHRK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
ataatttccatgcaacaagattatttaagccaacagcgatttactgattttcctttacac
ccgattgttttaaaagccttacagatcaaaggctttgagtattgtacacctattcaggca
ctttcattgcctatcagcttgcaaggtaaagatattgcaggacaagcgcaaaccggtacc
ggtaaaaccatcgcgtttttaactacaacttttcatcatttactggcttatcaaaaagat
aagacggactataaccaaccacgcgccttgatccttgctccaacccgtgaacttgcagtt
caaattagcaacgatgcggagtttttggcaaatgcaagcggattaaaaaccgcgcttgcc
tatggtggggacggttatgacaaacaactacaagccattgagcgcggagtagatatttta
atcggcaccacggggcgtattattgattatgtaaaacaaggtacgattcgtttagaacag
atccaagttgtggtattggatgaagcggatcgaatgtttgatttaggtttcattcgcgat
attcgttatttattgcgtaaatgtccttccccacaaaagcgtttaacaatgctcttctcg
gcaaccctatcttacaaagtacgtgaacttgcctttgaagatatgaatgatccggagtac
atcgaaattgaacccgaacaaaaaaccggtcatcgtattaaggaagaattattttaccct
tctaaccaagacaaaatggcattattgctaacattaatagaagaagaatggcctgagcgc
tgtattgtatttgcgaatacgaaacatcgttgtgaagaaatttggcgttatttagcggct
gacggacatcgtgtgggattactcaccggcgatgtcgcacagaaaaaacgtttgacacta
ttaaaacaattcactgacggtgtgctagatattcttgtcgcaaccgatgtagcggctcgg
ggtttacacattgcagatgttacccatgtatttaactatgatttaccggatgatcgtgaa
gattacgtacatcgcatcggacgtaccggtcgcgccggtgaaagcggtgtttcaattagt
tttgcctgtgaagaatatgcaatgaatcttcctgctattgaggaatatatcgggcattca
attccggtaagccaatatgatcagaattctttattaagtttacctaagccgttgccttta
aaatcccgctcaaataattcccgagtaccgctaagaaatcgcgtacatcggaaataa
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