Rodentibacter caecimuris: FEE42_07805
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Entry
FEE42_07805 CDS
T06473
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhey
Rodentibacter caecimuris
Pathway
rhey03030
DNA replication
rhey03430
Mismatch repair
rhey03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FEE42_07805 (dnaE)
03430 Mismatch repair
FEE42_07805 (dnaE)
03440 Homologous recombination
FEE42_07805 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhey03032
]
FEE42_07805 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhey03400
]
FEE42_07805 (dnaE)
Enzymes [BR:
rhey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FEE42_07805 (dnaE)
DNA replication proteins [BR:
rhey03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FEE42_07805 (dnaE)
DNA repair and recombination proteins [BR:
rhey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FEE42_07805 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
SSB
Motif
Other DBs
NCBI-ProteinID:
QIA77267
LinkDB
All DBs
Position
complement(1561837..1565313)
Genome browser
AA seq
1158 aa
AA seq
DB search
MTQPRFVHLRTHSDFSMIDGIAKVKPLIKTCAENNMVAMALTDFTNFCGVVRFYGEALSA
GIKPIIGADVRVRSELCGDELFELTLLAKNNTGYKNITLLLSKAYQRGYDDLPYIDQDWL
IEHREGVIILSGGTKGDVGKKLLKENAAETQSAVGFYQEFFPDHFYLALTRTGKPDEERY
IKAACALAETQHLPLVATNDVVFLKSDDAEAHEIRVAIHDGYTLDDPKRPKLYTTQQYFR
TEEEMCALFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGKLSTEDYLVMKSKEGLE
ERLAFLFPDEKVRSEKRAEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVADT
YGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEIEPQL
QAAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDSEGLHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALDMVNARMAREGKPMVDIASIPLDDPDSFELLK
RSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEV
SYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMA
KQRSVFEQGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPAE
FMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHHFSVNENGEIVYGIGAIKGV
GEGPIEALVSARNEGGFFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALAKN
LEDALKASDQHAKDEAMGQSDMFGVLTESHEEVENAYANTPPYTEKQILDGERETLGLYL
SSHPVSRYLKELSHYSSTRLKELTPNRRGQMSTAAGLVVSSRISITKKGNRLGIATLDDR
SGRLDITLFGESLEQFGEKLQKDTVVVVSGQVSFDDFSGGLKMTVRDMMTLDEARSRYAK
SLAISLSDEQITPVFIKQLKQMLEPVSGGTLPINVYYQSAKGRALLRLGVQWSITPTDEI
LTELANMLGESAVELEFG
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaccccgtttcgtccatctccgtacacacagtgatttttccatgattgatggg
attgccaaggtaaaaccattgattaaaacctgtgcggaaaataatatggtggcgatggca
ctgacggatttcaccaatttttgtggtgtcgtgcgtttttatggggaagcattgtctgcc
ggcattaaaccgattattggtgcggatgtgcgagtgcgtagcgagctatgcggtgatgaa
ttatttgagctgaccttacttgcgaaaaataatacgggctataaaaatatcacactgctc
ttatcgaaggcttaccaacggggctatgacgatttgccttacatcgatcaagattggttg
atcgaacaccgtgagggcgtgattattttatccggcggaacaaaaggtgatgtgggtaaa
aaattgttgaaagaaaatgcggcggaaacacaaagtgcggtcggtttttaccaagaattt
tttcctgatcatttttatctggcattaacccgaaccggcaagcctgatgaagaacgttat
atcaaagccgcttgtgcccttgcggagactcaacatttaccccttgtggcaaccaatgat
gttgtatttttaaagtcggatgatgcggaagcccatgaaatccgcgtggcgattcatgac
ggctataccttggatgatcccaaacgccctaaactttacacgacacagcagtatttccgt
actgaagaggaaatgtgtgcgttatttgccgatattccttccgcccttgaaaacacccta
ttaatcgcacagcgttgcagtgttaccttgcgccttgggcaatatttcttaccgcaattc
ccaacggggaaactgagtacggaagattatttggtgatgaaatcgaaagagggcttggaa
gaacggttggcgtttttatttcccgatgaaaaagtgcggtcggaaaaacgtgcggaatat
gatgaacgtttgcaagtagaacttgatgtaattaaccaaatggggtttcccggttacttt
ttgatcgtgatggagtttattcaatggtcgaaagataatgatattcccgtggggccggga
cggggttctggtgcggggtcattggtggcgtatgcgttaaaaattaccgatctcgatccc
ttagaatttgatttgctttttgaacgtttcttaaaccctgaacgtgtctccatgcccgat
tttgacgtggatttctgtatggacggacgggatcgtgtgattgagcacgtagcggacacc
tatgggcgtggtgcggtatcacaaattattactttcggtacgatggcggcgaaggcggtg
attcgcgatgtcgggcgggtattggggcacccctacggttttgtggatcgcatttctaaa
ttgattccgcccgatccgggcatgacacttgccaaggcctttgagattgagccacaatta
caagccgcctatgacagcgatgaggaagtgcaagcgctaattgatatggcgcgcaagctg
gagggcgtaacccgaaatgccggtaagcatgccggtggcgtagtgatttcacctacttta
attaccgattttgccccgctttattgtgatagtgaaggccttcacccggtaacccacttt
gataaaaatgatgtggaatatgccggtttagtcaaatttgacttcttgggattacgcacc
ctcaccatcatcaaatgggcgttggatatggtcaatgcccgtatggcacgggaaggcaaa
cccatggtggatattgcttcgattccgttggatgatccggattctttcgaattgctcaaa
cgttccgaaacgacagccgtattccagttggaatcgcgcggtatgaaagatttgattaaa
cgcctacaaccggactgttttgaagatattatcgcattggtggcactgtttcgccccggc
ccgctgcaatcggggatggtggataactttatcgaccgtaaacacggccgtgaagaggtt
tcttatcccgatgcgaattatcagcacgaaagtctgaaaccgattttggagcctacctat
ggcattattttgtatcaagagcaagtcatgcaaattgcacaggttcttgccggctataca
ttaggcggtgcggatttattgcgacgggcaatgggtaagaaaaaaccggaagaaatggcg
aaacaacgttctgtttttgaacaaggcgcgatcaaaaacggtgttgacggcgaacttgcg
atgaagattttcgatttggtggaaaaattcgccggttatggctttaataaatcccactcg
gcagcctatgcactggtttcttatcaaacactttggttgaaaacccatttcccggcggaa
tttatggcggcggtgatgacatcggaaatggacaataccgataaaattgtcggtttgtac
gatgaatgtttgcgaatgggattaaaagttaccccaccggatattaatgtgggtaaacat
catttcagtgtgaatgaaaacggtgaaatcgtctatggtatcggtgcgattaaaggcgtg
ggagaaggcccgattgaggcattggttagtgcacggaatgaaggcgggttttttaaagat
ttatttgacctgtgtgcccgtgtcgatttgaaaaaaatcaatcggcgcacctttgaaagc
ctgattatgtccggtgcatttgataaattgggtccgcaccgtgccgcactggctaaaaat
ttagaagatgcccttaaagcatctgatcaacacgccaaagatgaagcgatggggcaatcg
gatatgttcggggtgctgacggaaagccatgaagaagttgaaaatgcttacgccaataca
ccgccttacacggaaaaacaaattttagacggcgaacgagaaaccctagggctttattta
agcagccatccggtcagccgttatttaaaagagctatctcattacagctcaacccgttta
aaagaactgacaccgaatcgtcgcggacaaatgagtacggcagccggcttagttgtttcg
tcgcgtatttcgattaccaaaaaggggaatcgactggggattgcgacattagatgatcgc
tcgggacgtttagatattacgttatttggcgaaagtttggagcagtttggtgaaaaactg
caaaaagacacagtagtggtggtatcggggcaagtgagttttgatgatttttccggcggt
ttaaaaatgaccgtacgggatatgatgacgttagatgaagcccgttcccgctatgcaaaa
tcccttgccattagtttatcggacgaacaaatcacgccggtgtttattaaacaactgaaa
caaatgcttgaaccggttagcggcggaacgttaccgatcaatgtgtattatcaaagcgca
aaaggcagagcgttgctacgtcttggcgttcagtggtcgattaccccgaccgatgaaatt
ttaacggaattagccaatatgttgggcgaaagtgcggttgagttggagttcggataa
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