Rodentibacter caecimuris: FEE42_07845
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Entry
FEE42_07845 CDS
T06473
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhey
Rodentibacter caecimuris
Pathway
rhey03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhey00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FEE42_07845 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhey03021
]
FEE42_07845 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhey03400
]
FEE42_07845 (rpoC)
Enzymes [BR:
rhey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FEE42_07845 (rpoC)
Transcription machinery [BR:
rhey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FEE42_07845 (rpoC)
DNA repair and recombination proteins [BR:
rhey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FEE42_07845 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QIA77274
LinkDB
All DBs
Position
complement(1573701..1577969)
Genome browser
AA seq
1422 aa
AA seq
DB search
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFEMYIVTEPGMTDLERGQLLTEEQYLDAEDRWQDEFEAK
MGAEAIQDLLKGMDLDVECEKLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREEAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAERAYST
GQAELHSRVKVRITEYVKNEAGELDAVTTLTDTTIGRAILWMIAPKGMPYALFNQTLGKK
AISKLINEAYRRLGLKESVMFADQIMYTGFAYAARSGSSVGIDDMVIPEKKYEIISAAED
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVLNREGKPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGLVMTPLIEGGDEKVPLRELV
LGRVAAEDIYKPGTEEVLIARNTLLDEKLCDVLDANSVDSVKVRSVVTCDTNYGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQAKNTGTLH
LANAKFVTNDEGKLVLTSRNTELTVTDAFGRTKEHYKVPYGAVLSKGDGQEVTAGETVAN
WDPHTMPVVSEVTGFVKFVDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDANGNDVFLPETDVIAQYFLPGKAIVSLDDGVAVKVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPTEGEVYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVRAVTEYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKAIVTNAYDSEFLEGEQVEVARVKIVNRKREAEGKPPVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRIKNRQKAAELV
VEAIEEPISAFATDADIEAEFEFIADDATQSLAALLNSEMEE
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacagtcaaaaaccagcgaagattttgatgtg
attaaaattgggttagcctcaccggatatgatccgttcttggtcatttggtgaagtgaaa
aaaccggaaaccattaattatcgcaccttcaagcctgagcgtgacggtcttttctgtgca
cgtattttcggaccggtaaaagattacgaatgtttatgcggtaaatataaacgtttaaaa
caccggggcgttatttgtgaaaaatgtggcgttgaagtcactcaaaccaaagttcgccgt
gaacgcatggggcatattgaattagcctcaccggttgcgcatatttggttcttaaaatcc
cttccgtcccgtatcggtttattattggatatgccgttgcgtgatattgaacgcgtactt
tattttgaaatgtacatcgtcaccgagccgggcatgacggatttagagcgtggtcaatta
ttaacggaagaacaatatcttgatgctgaagatcgttggcaagatgaatttgaagcaaaa
atgggggcggaagcaatccaagatctattaaaaggtatggatcttgatgtggaatgcgaa
aaattacgtgaagagttacaagaaaccaattctgaaacaaaacgtaagaaaattactaaa
cgtctaaaattattagaagcatttattcagtcgggtaacaaaccggaatggatggtgatg
accgtattaccggtacttccaccggatcttcgtccgttagtaccattagacggcggacgt
tttgcgacttccgatttgaacgatttataccgtcgagtgattaaccgtaataaccgttta
aaacgtttattggatcttatcgcgccggatattattgtgcgtaatgaaaaacggatgttg
caagaatcggtcgatgcgttattggataacggtcgccgcggtcgtgcaattaccggttct
aatcgtcgtccgttaaaatccttagcagatatgattaagggtaaacaaggtcgtttccgt
caaaacctattgggtaaacgtgttgactattccggccgttcggtaatcaccgtaggtcca
tacctacacctacatcaatgcggtttaccgaagaaaatggcattggaattattccgtccg
tttatctatgcaaaattagaaagtcgcggttatgccacaaccattaaagcggcgaagaaa
atggttgagcgtgaagaggcgattgtttgggatattcttgcggaagttattcgcgaacat
ccgattttattgaaccgtgctccaacacttcaccgtttgggtattcaagcgtttgaacca
atcttaatcgaaggtaaagcgattcaattacacccgctcgtgtgtgcggcgttcaatgcg
gacttcgatggtgaccaaatggcggttcacgttccgttaacccttgaggcccaattagaa
gcccgcgcgttgatgatgtccaccaataacgtcctttcaccggcgaacggtgatcctatt
atcgtgccatcacaagacgtggtattggggctttattatatgacccgagaaaaagtgaac
ggtaaaggcgaaggaatgttattgcaagatccgcgtgaggcggaaagagcttattctacc
ggtcaggcagaattgcattctcgtgtcaaagtacggatcactgaatatgtaaaaaatgaa
gccggcgaacttgatgcagtgacaacattaacggataccaccattggccgtgcgatttta
tggatgattgcaccgaaaggtatgccttatgcgttgtttaatcaaacattaggcaaaaaa
gcgatctccaaattaattaatgaagcataccgtcgtttaggcttaaaagaatcggttatg
tttgccgaccaaattatgtacaccggttttgcttatgcggctcgctccggttcatctgtc
ggtattgacgacatggtgatccctgagaagaaatatgaaattatttcggcagcggaagac
gaagtagcggaaatccaagagcaattccaatccggtcttgtgacagcaggcgaacgttac
aataaagtgatcgatatttgggctgcggcaaacgaacgtgttgcaaaagcgatgatggaa
aatctttctacggaagaagtgctgaaccgtgaaggtaaacctgaaaaacaagcctcgttt
aatagtatttttatgatggcggattccggtgcgcgtggttctgcggcacagattcgtcag
ctggcggggatgcgtggtttgatggcgcgtccggacggctcgatcattgaaacgccaatc
accgcgaacttccgtgaagggttgaacgtacttcaatactttatttcaacccacggtgcg
cgtaaaggtttggcggataccgcattgaaaacggcgaactccggttatttgacccgtcgt
ctagttgacgtggcacaagacttggtgattattgaagatgactgtggtacgcacgaaggc
ttagtgatgaccccgttaattgaggggggcgatgaaaaagtcccacttcgcgagttagta
ttaggtcgtgtagcggcagaagatatctataagcctggaacagaagaagtcttaattgca
cgtaatacgttactagatgaaaaactttgtgatgtgttagatgcaaattcggtagatagc
gtgaaagtacgctcagtagtaacctgtgataccaattatggcgtctgtgctaaatgttac
ggtcgtgatttggcgcgcggtcacttaatcaaccaaggtgaagcggtaggcgttattgcg
gcgcaatctatcggtgaaccgggaacacagttaaccatgcgtacgttccatattggtggt
gcggcgtctgcggcagcaaaagaatctagcgtacaagcgaaaaataccggtacattacac
ttagccaatgcgaaatttgtcacgaatgatgaaggtaaattagtgttaacttcccgtaat
acggaattaactgttactgacgcattcggtcgtaccaaagaacactataaagtgccttat
ggtgcggtattaagtaaaggtgacggtcaagaagtcacggcgggtgaaaccgtagcgaac
tgggatcctcatactatgccggttgtgtctgaagtgaccggtttcgtaaaattcgtggat
atcgtggacggtttaaccgtaacacgtcaaaccgatgaattaactggtctatcctcgatt
gtggtacaagatgtgggtgaacgtgcaacggcaggtaaagatttacgcccaactattaaa
ttagttgacgcaaacggcaatgacgttttcttaccggaaaccgatgtcatcgcacaatac
ttcttaccgggtaaagcaattgtaagtttagacgatggcgtagcggtaaaagtgggtgaa
cctttagcccgtattccacaagaatctgtgggaacgaaagatattaccggtggtcttcca
cgcgttgcagacttatttgaagcccgtaaaccgaaagagccggcaattttggcggagatt
tcaggtatcgtatccttcggtaaagaaaccaaaggtaaacgtcgtttactgatcacaccg
actgaaggcgaagtgtacgaagaaatgattccgaaatggcgtcagctcaacgtatttgaa
ggtgagatggttcaacgtggtgatgtaatctccgatggtgcggaaactccacacgatatt
ttacgtttacgcggtgtacgtgccgtaaccgaatatattgtgaatgaagtgcaagatgtt
taccgcttacaaggggtaaaaatcaatgataagcacattgaagtcatcgttcgccaaatg
ttgcgtaaagcgatcgtcacaaatgcttacgactctgagttcctagaaggggagcaggta
gaagtggcacgcgtgaaaatcgtaaaccgtaaacgtgaagcggaaggtaaaccgccggtt
gaatttgagcgcgaattattgggtatcaccaaagcgtctcttgcgacggaatccttcatc
tctgcggcatcgttccaagaaaccacacgtgtgcttaccgaagcggcagtggcaggtaag
cgtgatgaattacgtggcttgaaagaaaatgttatcgttggtcgtttaattccggcaggt
accggttttgcctatcaccaaaaccgcattaaaaaccgtcaaaaagcagcggaattagtg
gtggaagcgatcgaagagcctatttctgctttcgcaaccgatgcggatatcgaagcggaa
tttgaatttatcgcagatgatgcaacgcaaagcctagcggcattattaaattccgaaatg
gaagagtaa
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integrated database retrieval system
