Rodentibacter caecimuris: FEE42_09110
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Entry
FEE42_09110 CDS
T06473
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rhey
Rodentibacter caecimuris
Brite
KEGG Orthology (KO) [BR:
rhey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rhey03009
]
FEE42_09110 (rlmD)
Enzymes [BR:
rhey01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FEE42_09110 (rlmD)
Ribosome biogenesis [BR:
rhey03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FEE42_09110 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
Cons_hypoth95
MTS
Methyltransf_4
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_23
Methyltransf_11
TraH_VirB8-like
PDGF
Ubie_methyltran
DOT1
Motif
Other DBs
NCBI-ProteinID:
QIA77487
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All DBs
Position
1836394..1837710
Genome browser
AA seq
438 aa
AA seq
DB search
MMLLYTKPKKTKQRQTITADILELDYQGLGVAKVNGKTWFIENALPPEKVDCLVVEEKRQ
YGRAVAKKWLEKSPLRVLPQCTYYERCGGCQAQHIPIEMQREAKQAALFKRLSRLQQQPI
AFQPMICDEAWVYRRRVRLSLCFNPKTKQIELGFRQKNSHDLIAVEHCEVLEPVINNLLP
KLTALLASYSRQKQLGHIELVAADNGVAMLLRYTGNLADTDRSLLLNFAEQENLMLFLQN
DDGIEQICGGLPYYQFANGIKLNFDIRDFIQINRRLNEKMVQTALDWLSLNSRDHVLDLF
CGMGNFTLPMAKRVKSAVGIEGVFEMVQKATLNAEHNQINNIEFFQANLDQPFVNQPWAN
QPFNKVLLDPPRSGAAFALKALCQLKAEKMLYVSCNPATLVRDAEILLGLGYKIEKSAVI
DMFPHTGHLESITLFSTK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
ataatgctcctttataccaaaccgaaaaaaacaaaacagcggcaaacgatcacggctgat
attcttgaactggattatcaaggattaggtgtggcaaaagtgaatggaaaaacgtggttt
atagaaaatgcactgccaccggaaaaagtggactgtcttgtggttgaggaaaaacgccaa
tatgggcgggcggtagcgaaaaaatggcttgaaaaaagtccgcttcgtgtactgccgcaa
tgcacctattatgagcgttgcggtggctgccaagcccaacatattcctattgaaatgcag
cgtgaagccaaacaggcagcattatttaaacgtttatcaagactccaacagcaacccatt
gcttttcaaccgatgatttgtgatgaggcttgggtgtatcgccgccgagttcgtttaagc
ttatgcttcaacccgaaaaccaagcaaattgagctgggttttcgtcagaaaaatagccac
gatttgatcgcggtggaacattgcgaagtgcttgaacctgtcatcaataatttactgcca
aaattgaccgcacttttagccagttattccagacaaaaacaacttgggcatattgagtta
gtcgcagcggataatggagtggcaatgctattgcgttacaccggaaatcttgccgatact
gatcgcagtttgttgttgaattttgccgaacaagaaaatcttatgctttttttacaaaat
gatgacggcattgaacaaatttgtggtggtttaccctattatcaatttgctaacggcatt
aaattgaattttgatattcgtgattttattcaaatcaaccgtcggttaaacgagaaaatg
gtacaaaccgcactggattggctctcccttaactcgagggatcatgtgctggatttattt
tgcggtatgggtaatttcacgcttcctatggcgaaacgggttaaaagcgcggtaggaatt
gaaggggtttttgagatggtacaaaaggcgacactcaatgccgaacacaaccagatcaat
aatattgaattttttcaggcaaatcttgaccaaccttttgtcaatcaaccttgggcaaat
cagcctttcaacaaagtgttgctcgatccgcctcgtagcggtgcagcgtttgcattaaag
gcactttgtcaattaaaggcggagaaaatgctttatgtttcttgtaatcctgccaccttg
gtacgtgatgcggagattttgctcgggctgggttataaaatagaaaagagcgccgtgatt
gatatgtttcctcatacggggcatttggaatccattacgttattttctacaaaataa
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