Rodentibacter caecimuris: FEE42_10055
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Entry
FEE42_10055 CDS
T06473
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
rhey
Rodentibacter caecimuris
Brite
KEGG Orthology (KO) [BR:
rhey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rhey03009
]
FEE42_10055 (srmB)
Enzymes [BR:
rhey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FEE42_10055 (srmB)
Ribosome biogenesis [BR:
rhey03009
]
Prokaryotic type
rRNA helicases
FEE42_10055 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
HypF_C_2
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIA77659
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All DBs
Position
2056924..2058237
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AA seq
437 aa
AA seq
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MNFPQFEQFDLSSELLKALEKKGYKRPTAIQMEAIPAAMEERDVLGSAPTGTGKTVAFLL
PALQHLLDYPRRKPGPPRILVLTPTRELAMQVAQQAEELAQFTHLNIATITGGVAYQNHG
EVFNTNQDLVVATPGRLLQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRW
RKQTLLFSATLEGELLVDFAERLLNDPVQVDAEPSRRERKKINQWYYHADSYEHKVKLLA
RFIETEKVSRGIIFVRRRENARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSDVVT
VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLL
GKIKRYTEEILKARILEGLEPRTKPPKDGEIKSVSKKQKARIKTKREEKKKTEAKKKVKL
RHKDTKNIGKRRKPSRK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaattttccccaatttgagcaatttgatctttcctctgagctcttaaaagcgcttgag
aaaaaaggctacaagcgtccaactgcgatccaaatggaagccattcctgctgcgatggaa
gagcgtgatgtgctaggctcagcaccaaccggcacgggcaaaaccgttgcttttttatta
ccggcattgcaacatctgcttgattatccacgccgtaaacccggcccgccacgtattctt
gtattaaccccaacccgtgagttggcaatgcaggtggcgcaacaagcggaggaattggca
caatttacccatttaaatatcgccactatcaccggcggtgtggcatatcaaaatcatggt
gaagttttcaataccaatcaagatttggttgtggcgacaccggggcgcttattgcaatac
attcaagaagaaaattttgattgccgttccgtggaaatattaatttttgatgaagcggac
agaatgttgcaaatgggttttgggcaggatgcggaaaaaattgcggcggaaacccgttgg
cgcaaacaaacgttattattttcagcaaccttagagggcgaattattggtcgattttgcc
gaacgtctgcttaatgatccagtgcaagtggatgccgaaccaagtcgccgtgaacgtaaa
aaaatcaatcaatggtattatcacgccgatagttatgaacacaaagtaaaattattggct
cgttttattgaaacagaaaaagtaagccgaggcattatttttgtgcgtcgccgtgaaaat
gcccgagaactttccgaaaccttgcgtaaacggggtattcgttccgcttacttggaaggt
gaaatggcacaaacccaacgtaacaatgccattgataaattgaaatcagatgtggtcacg
gtgttagtggcaacggatgtagcggcacgtggtattgatattgatgatgttagccatgtg
atgaattttgacttgccatatagtgcggatacttacctacatcgtattgggcgtaccgct
cgagcgggcaaaaaagggacggcggtatcttttgtggaagctcacgattataaattgcta
ggcaaaattaagcgttatacggaggaaattctaaaagctcgtattctagaaggcttagaa
ccccgcaccaaaccaccgaaagacggcgaaattaaatcggtgagtaaaaaacaaaaagcc
cgtatcaaaacaaaacgggaagaaaagaaaaaaacagaggcgaagaaaaaagtgaagcta
cgccacaaggatacgaaaaatatcgggaagcgacgtaaaccgagtagaaaataa
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