Rodentibacter caecimuris: FEE42_12455
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Entry
FEE42_12455 CDS
T06473
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhey
Rodentibacter caecimuris
Pathway
rhey03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FEE42_12455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhey03400
]
FEE42_12455
Enzymes [BR:
rhey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FEE42_12455
DNA repair and recombination proteins [BR:
rhey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FEE42_12455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
RecG_dom3_C
SecA_DEAD
DUF6007
Motif
Other DBs
NCBI-ProteinID:
QIA78076
LinkDB
All DBs
Position
2567630..2571070
Genome browser
AA seq
1146 aa
AA seq
DB search
MKTAFFQLDIPSGPNDHKILGNVLQGADALAISEIAEQHQHLTVVVTPDTRSAVRLSGIL
SELSEQEVKLFPDWETLPYDTFSPHQDIISSRLSALFHLQNAKKGIFLLPIATLMQRLCP
PQYLQHNVLLIKKGDRIVIDKMRLQLESAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVP
FRLDFFDDEIDSIRTFDVDTQRTLDEIQSINLLPAHEFPTDDKGIEFFRAQFRETFGEIR
RDPEHIYQQISKGTLISGIEYWQPLFFAEMATLFDYLPEQALFVDMEGNQAQGVRFYQDA
KQRYEQRKVDPMRPLLPPERLWLNIDEVNRQLKAYPRITLKNEKVRASVRQKNLPVASLP
EITIQSQQKEPLGQLRQFIEHFNGNLLFSVETEGRRETLLDLLQALKIKPKQIQSLTQTE
QEKFSLLVSSFEQGFIIEQSLPLAIIGEANLLGERVQQRRRDKRKTINPDTLVRNLAELK
IGQPVVHLDHGVGRYGGLVTLDAGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDE
SAPLHKLGNEAWAKSRQKAAEKIRDVAADLLDVYAQREATKGFAFKYDREEFQQFAATFP
FEETHDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVGVLVPT
TLLAQQHYENFKDRFANLPVNVEVLSRFKTAREQKQILQNLAEGKVDILIGTHKLIQSDV
KFHDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIST
PPARRLSIKTFVRQKDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARV
IVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPKMMTKDAQRRLEALESLDNLGAGFILATHDLEIRGAGEL
LGNEQSGQIETIGFSLYMELLDAAVKALKEGREPSLEELTQQQAEIELRVAALLPDEYLG
DVNMRLSFYKRIAAAETRQELDELRVELIDRFGLLPEATKNLLQIAELRLLIEPLKILRI
DAGTQGGFIEFSPTTQVAPEKFIQLIQKEPIVYRFDGPSKFKFMKDLSDNKVRLEFVVNL
IKFLLE
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccgctttttttcaactcgatatcccctccggtccaaatgatcacaaaatttta
ggtaatgtcttgcaaggcgctgatgcccttgcgattagcgagattgccgaacaacaccaa
catttaactgtcgtagtgactccagataccagaagtgcggttcgtttatccggtatttta
tcggaattaagcgagcaagaagtgaaactatttcctgattgggaaacgctaccttatgat
actttttcgcctcatcaagatattatttcttcccgtctaagcgcgctttttcatctccaa
aatgcaaaaaaaggcatttttttgttgccgattgcgaccttaatgcagcgcctttgcccg
ccgcagtatttacaacataatgttttattgattaaaaaaggtgatcgcattgttattgat
aaaatgcgtttacaactggaatctgccggttatcgtgccgtagagcaagtgctggagcat
ggggaatatgctgtgcggggggcattgcttgatctttttccgatgggaagtgcggtgcct
tttcgattagatttttttgatgatgaaattgattctatccgcacttttgatgtggatacg
caacgcacgctagatgaaattcaatctattaatcttctgcctgcacacgaatttcctact
gatgacaaaggtattgaattttttcgcgctcaatttcgagaaacttttggggaaattcgg
cgcgatccggaacacatttatcaacaaattagcaagggaaccttgatttccggtattgaa
tattggcaaccgttattttttgcagaaatggcaaccttatttgattatttgccggaacaa
gccttatttgtggatatggaaggcaaccaagcacaaggcgtgcgtttttatcaagatgcg
aaacagcgctatgagcaacgcaaagtcgatccaatgcgcccgttattaccgccggaacgt
ttatggctaaatattgatgaagtgaatagacaactgaaagcctatccgcgtattacactt
aaaaacgaaaaagtgcgcgcgtcagtgcgtcagaaaaacttaccggtagcctcattgcct
gagatcactattcaatcacaacaaaaagaacccctcgggcaacttcgtcaatttattgaa
cattttaatggaaacctattgttttcggtcgaaacggaaggacgtagggaaactctgctt
gatttacttcaagcgttaaaaattaaacctaaacaaattcaatccctcacacagactgag
caagaaaaatttagtttattggtcagctcctttgagcaaggttttattattgagcaatcc
ctgccgttagccattattggtgaagcgaatttactgggcgaaagagttcaacagcgccga
cgtgataagcgtaaaaccattaatccggatacgcttgtgcgtaatttggctgaacttaaa
atcgggcaaccggtggtacatttggatcatggtgtggggcgttatggcggtttggtaaca
cttgatgccgggggaattaaagcggaatatttgctcctgaattatgccaatgaatctaag
ctttatgtgccggtcacctcgttgcatttgattagtcgctatgtaggcggttccgatgaa
agtgcgccattacataaactgggtaacgaggcttgggcaaaatcacgccaaaaagccgca
gaaaaaattcgtgatgtggcggcggatctgctggatgtttatgcacaacgtgaggcgaca
aaaggctttgcctttaaatatgatcgcgaagaatttcaacagtttgcagcaactttccct
tttgaagaaacccatgatcaagaaatggcgatcaatgccgttatttcagatatgtgtcag
cccaaagcgatggatcgtttagtctgtggcgatgtaggctttggtaaaaccgaagtggca
atgcgtgcggcatttttggcggtaatgaatcataaacaagtcggcgttttagtgcctacg
acattgcttgcccaacaacattatgaaaactttaaagatcgttttgccaatttgccggta
aacgtggaagtgctatctcgttttaaaacggcgagagaacaaaaacaaattctgcaaaat
ctggcagaaggtaaagtggatattttgatcggcacccataaactgattcaatcggatgtg
aaatttcatgatctcggtttgctgattattgatgaagaacatcgttttggtgtggggcaa
aaagaaaaaattaaacaactacgtgccaatatcgatattctcaccctgacggcaaccccg
attccacgcacccttaatatggcaatgaacggtattcgtgatctctctattatttccacg
ccgccagctcgccgcttgagtattaaaacctttgttcgtcaaaaggatgacttagtggta
cgcgaagccattttgcgtgaaattctgcgtggcggacaggtatattatttacacaatgat
gtggcgagtattgaaaatacggcagaaaaattgaccgcacttgtgccggaagctcgggtg
attgtgggacatggacaaatgcgggagcgtgaactagaacgggtgatgagcgatttttat
catcaacgctataatgtattggtttgctcaaccatcattgaaacgggcattgatgttcca
acggcaaatacgattatcattgaacgggcggatcattttggtctggcacaattacatcaa
ttacgtggtcgggtagggcgttctcatcatcaagcctatgcctacttacttacccctccc
ccgaaaatgatgacaaaagatgctcaacgccgtcttgaagctttggaaagtttagataat
cttggcgcgggatttattcttgccacccatgatttagaaattcgtggcgcaggggaattg
ttggggaatgaacaaagcggacaaattgaaaccatcggtttttccctttatatggaattg
ttggatgcggcggtgaaagctttaaaagaaggacgtgagccgtctttggaagaattaacc
caacaacaggctgaaatcgaactgagagtcgcggctttgttaccggatgaatatttaggc
gatgtgaatatgcgtttatccttctataaacgtattgccgccgccgagacaagacaagaa
ttagatgaattaagagtcgaattgatcgaccgttttggtttgttaccggaagcaacgaaa
aacttacttcaaattgccgaattacgtttattgattgagcctctaaaaatacttcgcatt
gatgccggcacacaagggggctttattgaattttcaccgacaacacaagtcgcaccggaa
aaatttattcagcttattcaaaaagaaccgattgtctatcgttttgacgggccgtcgaaa
tttaagtttatgaaggatctttcggataataaagtgcggttggaatttgtggtaaattta
atcaagtttctgcttgagtaa
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