Rhodoferax sediminis CHu59-6-5: EUB48_01500
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Entry
EUB48_01500 CDS
T06165
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EUB48_01500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhf03021
]
EUB48_01500 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhf03400
]
EUB48_01500 (rpoC)
Enzymes [BR:
rhf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EUB48_01500 (rpoC)
Transcription machinery [BR:
rhf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EUB48_01500 (rpoC)
DNA repair and recombination proteins [BR:
rhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EUB48_01500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QDL36116
UniProt:
A0A515D6S1
LinkDB
All DBs
Position
301593..305819
Genome browser
AA seq
1408 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDFDAKRKEYGDEFVAKM
GAEGIKDLLQAIDLDSSIERLRGDLTGSEVKVKKNAKRLKVMEAFRKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPIM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYTTRERINAKGEGLIFSDTGEVRRAFDAGEV
ELTARINVRLTEYTKDKETGEFVPSTQLWETTAGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISISIDDMLVPKEKPAIIERAEKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAQLAKQKTIDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEHDCGTHNGSLMRAIVEGGEVIESLRDRILG
RTAAEDVLHPENHAVLVKAGDMLDEDIIDELTAVGVDEVKVRTALTCETRFGICAKCYGR
DLGRGGLINGGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
ATMRYVTNSRGELVVIARSGEIVIHDEHGRERERHKVPYGATLTVKADQAIKAGTILANW
DPLTRPIITEFAGQAKFENVEEGLTVAKQVDEVTGLSTMVVIDPKRRGSTKVVRPQVKLI
DAQGQEVKIPGTDHSVTIGFQIGALVQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGVLAEMTGTVSFGKETKGKIRLQITDPEGKVWEDLVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVDNAGDANYIAGEQVERSEILNTNDALRGEGKIPATFTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKAKDQMDEAERRA
IAEAEAAELASLSEPAPATEASEGAAAD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcactactggacctgttcaagcaattcacgcccgatgagcatttcgatgccatc
cggatcggcatggcgtcgcccgaaaagatccgttcctggtctttcggcgaggtgaaaaag
cccgagaccatcaactatcgcaccttcaagccggagcgcgacggcctgttctgcgccaag
atcttcgggcccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtcatctgcgagaagtgcggcgtggaagtcacgcagaccaaggtgcgccgcgaa
cgcatgggccacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
cccagccgtttgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtat
tttgaagcctatgtggtgaccgaccccggcatgaccccgctgaaaaagttcagcatcatg
tccgaggacgattttgatgccaagcgcaaggaatacggcgacgagttcgtcgccaagatg
ggcgccgagggtatcaaggacctgctgcaggcgattgatctcgactcctccatcgagcgg
ctgcgcggcgatctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctcaag
gtgatggaagccttccgcaagtccggcatcaagcccgagtggatggtgctcgacgtgctg
cccgtgctgccgcccgacctgcgcccgctcgtgcccctggacggtggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgccgcctg
ctggagctcaaggccccggaaatcatcgcgcgcaacgaaaagcgcatgctgcaggaagcc
gtggacagcctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcga
gcgctcaagtcgctcgccgacatgatcaagggcaagagcggccgcttccgccagaacctg
ctgggcaagcgcgtcgactactcgggacgttcggtgattaccgtgggcccgacgctcaag
ctgcaccagtgcggcctgcccaaactgatggcgctcgaactgttcaagcccttcatcttc
tcgcgcctggaagccatgggcattgcgaccaccatcaaggccgcgaagaaggaagtcgag
tccggcacgccggtggtctgggacatcctggaagaggtgatcaaagagcaccccatcatg
ttgaaccgggcgcctacgctgcaccgcctgggcatccaggccttcgagcccatcctgatc
gaaggcaaggcgatccagctgcacccgctggtgtgcgcggcgttcaacgccgacttcgac
ggcgaccagatggcggttcacgtgccactgtcggtggaagcgcaaatggaggcgcgcacc
ttgatgctggcctccaacaacgtgctgttcccggccaatggagagccgtccatcgtgccg
tcgcaggacgtggtgctgggcctgtactacaccacgcgtgagcgcatcaacgccaagggc
gaaggcctgattttctccgacaccggggaagtccggcgcgccttcgatgcgggcgaggtg
gaactgaccgccagaatcaatgtgcgcctgaccgagtacaccaaggacaaggaaaccggc
gagttcgtgccctcgacccaactgtgggaaaccacggccgggcgcgcactgctgtccgaa
atcctgcccaagggcctgccgttctccaacatcaacaaggcgctgaagaagaaggaaatt
tccaagctcatcaacgtctcgttccgcaagtgcggcctcaaagagacggtggtgtttgcc
gacaagctgctgcaaaacggcttccgtctggcgaccaaggccggcatctcgatcagcatc
gacgacatgctggtgcccaaggaaaaaccggccatcatcgagcgcgccgaaaaggaagtc
aaagagatcgagcagcagtacgtgtccggtctggtgacctccggcgagcgctacaacaag
gtggtagacatctggggcaaggccggcgacgaagtctccaaggtcatgatggcccagctg
gccaagcaaaagaccatcgaccgccacggcaaggaagtcgaccaggagtcgttcaactcc
atctacatgatggccgactcgggcgcgcgtggttccgccgcgcagattcgccagctggcc
ggcatgcgcggcctgatggccaagcctgacggctccatcatcgagacacccatcaccgcg
aacttccgcgaaggcctgaatgtgctgcagtacttcatttccacccacggcgcccgcaag
ggtctcgcggacacggcgctgaagacggccaactcgggctacctgacacgccgcctggtg
gacgtgacgcaggatctggtggtgaccgagcacgactgcggcacgcacaacggctcgctg
atgcgcgccatcgtcgaaggcggcgaggtgatcgagtcgctgcgtgaccgtatcctcggg
cgtaccgcggccgaagatgtgctgcaccccgagaatcacgcggtgctggtcaaggcgggc
gacatgctcgacgaggacatcatcgatgagctgaccgcggttggcgttgacgaggtcaag
gtgcgcacggcgctgacctgcgagacgcgtttcggcatctgcgccaaatgctatggccgc
gatctgggccgtggcggcctgatcaacggcggcgaggcggtcggcgtgattgccgcgcag
tcgatcggcgagcccggcacgcagctgacgatgcgcaccttccacatcggcggcgcggcc
tcgcgggcggcgatcgcctccagcgtggaagccaagtccaacggcgtgatcggcttcaac
gccaccatgcgctatgtgaccaacagccgtggcgaactggtggtgattgcccgctccggc
gaaatcgtcattcatgacgagcatggccgcgagcgagaacgccacaaggtgccctacggt
gccacgctgacggtgaaggccgaccaggccatcaaggccggcaccatcctggccaactgg
gatccgctgacgcgcccgatcattaccgagtttgcgggccaggccaagttcgagaacgtc
gaagaaggcctgacggtggccaagcaggtcgatgaagtcacgggcctgtccaccatggtg
gtgatcgacccgaaacgccgcggttcgaccaaggtggtgcggccacaagtcaagctgatc
gatgcgcagggccaggaggtcaagatccccgggaccgatcactcggtgaccatcggcttc
cagatcggtgcgctggtgcaggtgcgcgacggccaggacgtgggccccggcgaagtgctg
gcgcgcattccggtcgaaggccagaagacgcgcgatatcaccggcggtctgccgcgcgtg
gccgagctgttcgaggcccgcagcccgaaggacaagggcgtgctggccgagatgaccggc
accgtgtcgttcggcaaggagaccaagggcaagatccgcctgcagatcaccgaccccgag
ggcaaggtctgggaagacctggtgccgaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggcgagtccgtggtggacggcccggccgatccacaggacatcctgcgc
ctgctgggctccgaggaactggcgcgctacatcgtcgatgaagtgcaggacgtgtaccgc
ctgcaaggcgtgaagatcaacgacaagcacatcgaggtgatcgtgcgccagatgctgcgc
cgcgtcgtggtcgacaacgcgggcgatgccaactacattgccggcgaacaggtcgaacgc
agcgagatactcaacaccaacgacgccctgcgcggcgagggcaagattcccgcgaccttc
accaacctgctgctgggcatcaccaaggcctcgctgtccaccgacagcttcatcagtgcc
gcttccttccaggaaacgacgcgggtgctgaccgaagccgccatcatgggcaaacgcgac
gagctgcgcggcctgaaggaaaacgtcatcgtcgggcgcctgattcccgccggcaccggc
atggcgtaccaccaggcacgcaaggccaaggaccagatggacgaggccgagcgccgcgcc
atcgccgaggccgaggccgcggagctggccagcctgtccgagccggcgccggcgaccgaa
gccagcgaaggggcggcagccgactaa
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integrated database retrieval system
