Rhodoferax sediminis CHu59-6-5: EUB48_02215
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Entry
EUB48_02215 CDS
T06165
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03030
DNA replication
rhf03430
Mismatch repair
rhf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EUB48_02215
03430 Mismatch repair
EUB48_02215
03440 Homologous recombination
EUB48_02215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhf03032
]
EUB48_02215
03400 DNA repair and recombination proteins [BR:
rhf03400
]
EUB48_02215
Enzymes [BR:
rhf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EUB48_02215
DNA replication proteins [BR:
rhf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EUB48_02215
DNA repair and recombination proteins [BR:
rhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EUB48_02215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DEDDh_C
DUF5795
Motif
Other DBs
NCBI-ProteinID:
QDL39589
UniProt:
A0A515DGR9
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All DBs
Position
460207..460860
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AA seq
217 aa
AA seq
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MARFSPGAVVAALRREWRLKHLRDPAYRFMFDAAPPDEWVALDCETTGLNVRSDKIISIG
AVRIVGNRIMTSERLALLVRPDKGISADSVRIHRLRERDVAQGLPIAEAMAQLMRFIGSR
PLVGYYLEFDVAMLNRAIRPLLGVGLPQPRIEVSALYYDYKFKQLPPYQQQLGADIDLRF
ATLMDDLGLPQRAAHDAVNDAVMAALAFIKLRQLHGG
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
ctggcgcgcttttcgcccggggcggttgtcgccgcgctgcggcgcgaatggcgtctgaag
cacctgcgcgacccggcttaccggttcatgttcgatgcggcgccgcccgatgagtgggtg
gcgctggactgcgagaccaccggcctgaatgtgcgcagcgacaaaatcatctcgatcggc
gcggtacgcatcgtgggcaaccgcatcatgaccagcgagcggctggcgctgctggtgcga
ccggacaagggtatctcggccgacagcgtgcgcattcatcgcctgcgcgaacgcgacgtg
gcgcagggtctgccgatcgcagaggcgatggcgcagctgatgcgtttcatcggcagccgg
ccgctggtgggctattacctggagttcgacgtggcgatgctgaatcgcgccatcaggccc
ctgctgggcgtgggcctgccgcagcccaggatcgaagtctcggcgctgtattacgactac
aagttcaaacagctgccgccctaccagcagcagctcggcgccgatatcgacctgcgcttt
gccacgctcatggacgacctgggcctgccgcagcgtgccgcccacgatgcggtgaacgat
gccgtgatggcggcgctggcgttcatcaagctgaggcagctgcatggcgggtga
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