Rhodoferax sediminis CHu59-6-5: EUB48_06460
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Entry
EUB48_06460 CDS
T06165
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03420
Nucleotide excision repair
rhf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EUB48_06460
03430 Mismatch repair
EUB48_06460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhf03400
]
EUB48_06460
Enzymes [BR:
rhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EUB48_06460
DNA repair and recombination proteins [BR:
rhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EUB48_06460
MMR (mismatch excision repair)
Other MMR factors
EUB48_06460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
QDL36966
UniProt:
A0A515D989
LinkDB
All DBs
Position
1339404..1341794
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AA seq
796 aa
AA seq
DB search
MFSEITRPGATNSPLLDNLNPEQRAAVTLPNEHALILAGAGSGKTRVLTTRIAWLLQTGQ
ISPGGVLAVTFTNKAAREMMTRLSSMLPVNVRGMWIGTFHGLCNRFLRAHHKLANLPQSF
QILDTQDQLSAIKRLMKQFNVDDERFPPKQTQWFIAGCKEDGLRPNMVEARDEETRKKIE
IYQLYEEQCQREGVVDFGELMLRSYELLRDNDPIREHYQRRFRHILIDEFQDTNKLQYAW
IKQLAGPESSVLAVGDDDQSIYAFRGARVGNMADFVREFGVKHQIKLEQNYRSYSNILDS
ANELISHNSKRLGKNLRTDQGPGEPVRVYESTSDFAEAQWMVDEMRQLVRGEGLDAGIAR
HEIAVLYRSNAQSRVIETALFNAGVPYRVYGGLRFFERAEIKHALAYLRLLENPRDDTSF
MRIVNFPPRGIGARSIEQLQDAARAAGCSLVDAVSTVTGKAGANLGAFVARIDVLREQTL
GMSLREIIEMVLGASGLIEHYKAEREGADRVENLEELVNAAESFVSQEGFGRDAVALPVD
ELGHALTQSPASQGLDPYRPLADQPLDTDTGETLSPLAAFLAHAALESGDNQAQAGQDAV
QLMTVHSAKGLEFDCVFITGLEEGLFPHENSMSDQDGLEEERRLMYVAITRARKRLYLSY
SQTRMLHGQTRYNPKSRFFDELPESALKWLTPKNQGFGSGFAMNSGAGRERYSRAGGGFG
QDYSRLTGQYASPPVPAQKAAPSHGLRLGLQVFHTKFGEGTVITLEGVGDDARAQVNFPR
HGVKWLALSVAKLVPV
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgttctcagaaatcacacgacccggcgcgaccaactccccattgctggacaaccttaac
ccggagcagcgcgccgctgtgacgctaccgaacgagcatgcgctgattttggccggggct
ggttcgggcaagacgcgcgtgctcaccacgcgcatcgcctggctgctgcaaaccggccag
atctcgcccggcggcgtgctggccgtgacctttaccaacaaggccgccagggagatgatg
acgcgcctgtccagcatgctgccggtgaacgtgcgcggcatgtggatcggcaccttccac
gggctgtgcaaccggtttttgcgcgcgcaccacaagctcgccaacctgccgcaaagcttc
cagatcctcgacacgcaggaccagctcagcgcgatcaagcgcctgatgaagcagttcaac
gtggacgacgagcgctttccgcccaagcagacgcaatggttcatcgcgggctgcaaggaa
gacggcctgcgccccaacatggtggaggcgcgtgacgaagagacgcgcaagaagatcgag
atttaccagctctacgaggagcagtgccagcgcgaaggcgtggtcgatttcggcgagctg
atgctgcgctcctacgagctgttgcgcgacaacgacccgattcgcgagcattaccagcga
cgttttcgccatatcctgatcgacgaattccaggacaccaacaagctgcagtacgcgtgg
atcaagcagctggccggccctgaaagcagcgtgctggcggtcggcgacgacgaccagagc
atctacgcctttcgcggtgcgcgagtcggcaacatggccgattttgtgcgggagttcggc
gtcaagcaccagatcaagctggagcagaactaccgcagctacagcaacatcctggactcg
gccaacgagctgatcagccacaacagcaagcgcctgggcaagaacctgcgcaccgatcag
gggcccggcgagccggtgcgcgtgtatgaatccaccagcgacttcgccgaggcgcagtgg
atggtcgatgaaatgcgccagctggtgcgcggcgaaggccttgatgccggcatcgcgcgc
cacgagattgccgtgctgtaccgcagcaacgcgcagagccgggtgatcgagacggcgctg
ttcaacgccggcgtgccgtaccgcgtgtacggcggcctgcggtttttcgagcgcgccgag
atcaagcacgcactagcctatttgcgcctgctggagaacccgcgcgacgacaccagcttc
atgcgcatcgtcaactttccgccgcgcggcattggcgcacgcagcatcgagcagttgcag
gatgctgcgcgcgccgccggctgctcgctcgttgacgccgtgagcacggtgacgggcaag
gcgggcgccaacctgggcgcgttcgtggccaggatcgacgtgctgcgcgaacagactctc
ggcatgtcgctgcgcgagatcatcgagatggtgctgggtgcgagcggcctgatcgagcac
tacaaggccgagcgcgaaggcgcggaccgcgtcgagaacctggaagaactcgtcaacgcg
gccgaaagttttgtctcgcaggaaggctttggccgggacgcggtggcgctgccggtggac
gagctgggccatgcgctgacacagagcccggcgagccagggattggacccctatcggccc
ttggcggaccagcccctggataccgacacgggcgagacgctgtcaccgctggcggctttc
ctggcccacgctgccctggagtccggcgacaaccaggcgcaggccgggcaggacgcggtg
caactgatgaccgtgcattccgccaaggggctggaattcgactgcgtgttcatcaccggg
ctggaagaggggctgttcccgcacgagaactcgatgagtgaccaggacggcctggaagaa
gagcgccgcctgatgtatgtggccatcacgcgggcgcgcaagcggctgtacctgagctac
tcgcaaacacgcatgctgcacggccagacccgctacaaccccaagagccggttttttgac
gaactgccggagtcggcactgaagtggctcaccccgaagaatcagggcttcggttccggg
tttgctatgaattcgggagctggaagagaacgctactcaagggctggaggcggttttggt
caagattattcgcgcttgacggggcagtatgcgagcccgcccgtgccggcgcaaaaagcc
gctccctcgcacggcctgcgcttggggctgcaggtgtttcacaccaagttcggcgaaggc
accgtgatcacgctggagggcgtgggtgacgatgcgcgcgcgcaggtcaacttcccgcgc
cacggcgtcaagtggctggcgctgagcgtggccaagctggtgccggtgtaa
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