Rhodoferax sediminis CHu59-6-5: EUB48_07620
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Entry
EUB48_07620 CDS
T06165
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03030
DNA replication
rhf03430
Mismatch repair
rhf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EUB48_07620
03430 Mismatch repair
EUB48_07620
03440 Homologous recombination
EUB48_07620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhf03032
]
EUB48_07620
03400 DNA repair and recombination proteins [BR:
rhf03400
]
EUB48_07620
Enzymes [BR:
rhf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EUB48_07620
DNA replication proteins [BR:
rhf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EUB48_07620
DNA repair and recombination proteins [BR:
rhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EUB48_07620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QDL37169
UniProt:
A0A515D9U5
LinkDB
All DBs
Position
1586561..1590043
Genome browser
AA seq
1160 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDEIVQAAAHDGQPALAITDLSNLFGAIKFYKAARGAGVKP
LIGTEIFLEGLGADAGALSRLVLLVQNRQGYLNLSELLARAWTQNVVKAQAVVKLAWLTE
LGEGLIVLSGAQAGPVGQALVQGDSSRASAAALQLAALFPHRFYIELQRAGRPDDEAHVV
AAVQLAASLKLPVVATHPVQFTGEDDYEAHEARVCIAEGEILGNQRRARKFTREQYFKTA
AQMQALFADVPSSIANTLEIARRCSLTLVLGKPQLPDFPTPEVQGRKLSPDDYFRHASFE
GLEQRLAHLYPDAAQRDRERPRYVERLEFEIDTILKMGFPGYFLIVGDFINWAKNNGCPV
GPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYV
KLKYGKEAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGTHITIDGAIK
AEPILAERLDKEDEVKTLLALAQKLEGMTRNVGMHAGGVLIAPSRLTDFCPLYQQPGSDS
AVSQFDKDDVEAIGLVKFDFLGLATLTILEIAKDFITQRHKGQENFAYENLPLGDPKVYR
LFAEGKTEAVFQFESRGMQGMLRDARPTRLEDLIAMNALYRPGPMDLIPTYIARKQGREP
VVYPDPRVEAILSETYGVMIYQEQVMQMAQILGGYSLGGADLLRRAMGKKKAEEMAKHRQ
IFRDGAAQKGIATDKADAVFDDMEKFAGYGFNKSHSAAYALLAYHTAWLKVHYTAEFFCA
NMTVEMDDTDKLRVLHEDALKMGMTFEAPDVNRGFHRFEPISDTVIRYGLGAVKGTGQQA
IDAIVAARQEGGPFRSLFDFCVRVDRSKFNKRALEALIKAGAFDSLQLNRAALIASVDRA
FDFATAAQANVNQGGLFDMGDDDHGSSTQEPDLVDATPWGVKERLTYEKTAIGFYLSGHL
FDEVSHEVRQFIKRTVDELIDSREQQLIAGVVSDFRVINSQRGKLALFKLDDKSGAIEAT
ADEAVLNTHRNLLKDDEVLIVSGRLQPGRGGFEPRFSISQVWDLATARCRFGKFLRVAVN
GKAPDIARLVKDFPPRRETTEQGELLRGLGVRLSVQRQAGSTGAAAELQLGDEARFFPTD
AALASWMAQADQRQAAIVYD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctacgcctgcacaccgaattttccgtcgtcgacggtaccaaccgcatc
gatgaaattgtccaggctgctgcccacgatggccagcccgcgctggccatcaccgacctc
agcaacctgttcggcgccatcaagttctacaaggccgcgcgcggcgccggcgtcaagccg
ctgatcggcacagaaatatttctcgaagggttgggtgcggacgcgggtgccctgtcgcgc
ctggtgctgctggtgcaaaaccgccagggttacctgaacctgtccgagttgctggcgcgc
gcctggacgcaaaacgtggtcaaggcccaggcggtcgtcaagctggcgtggctgacggag
ctcggcgaaggcctgatcgtgctctccggcgcgcaggccggcccggtcgggcaggcgctg
gtgcagggcgactcaagccgtgccagcgcggcggcgctgcagctcgccgcgctgttcccg
catcgcttctatatcgagctgcagcgcgccggccgtcctgatgacgaagcccatgtggtc
gccgccgtgcaactggccgccagcctgaagctgcccgtggtggcaacgcatccggtgcag
ttcaccggcgaggacgactacgaggcgcatgaggcgcgcgtgtgcattgccgagggcgaa
atcctgggcaaccagcgccgtgcgcgcaagttcacgcgcgagcagtatttcaagacggcc
gcgcagatgcaggcgctgtttgccgacgtgccctccagcatcgccaacacgctggagatc
gcgcgccgctgcagcctcacgctggtgctcggcaagccgcagctgccggactttcccacg
cccgaggtgcaggggcgcaagctctcgcccgacgactacttccgtcatgcctccttcgag
ggtctcgagcagcgcctggcgcatctgtacccggatgcggcgcagcgcgaccgggagcga
ccacgctacgtggagcggctcgagttcgagatcgacacgatcctgaagatgggctttccc
ggctacttcctgatcgtgggcgacttcatcaactgggccaagaacaacggctgcccggtc
ggcccgggccgcggctcgggcgccggctcgctggtggcctacgcgctgaagatcaccgac
ctcgatccgctgcaatacaacctgctgttcgagcgtttcctgaaccccgagcgcgtgtcg
atgcccgacttcgacatcgacttttgccagagcaaccgcgaccgcgtgatcgactacgtc
aagctcaaatacggcaaggaagccgtgagccagatcgccaccttcggcacgatggcggcg
cgcgcggcgatccgcgacgtgggccgcgtgctggacatgagctacacattttgcgacggc
atcagcaagctgattccgaacaagccgggcacccacatcacgatcgacggcgcgatcaag
gccgagccgattctggccgagcggctggacaaggaggacgaggtcaagacgctgctggcg
ctcgcgcaaaagctcgagggcatgacgcgcaacgtgggcatgcacgcgggcggcgtgctg
attgcgccgagccggctgaccgacttttgtccgctgtatcagcagcccggcagcgactcg
gcggtgagccagttcgacaaggacgatgtggaagccatcggcctggtgaagttcgacttt
ctgggcctggccacgctgaccatcctggaaatcgcgaaggacttcatcacgcagcggcac
aaaggccaggaaaacttcgcgtacgagaacctgcctttgggcgaccccaaggtgtaccgg
ctgtttgccgagggcaagaccgaggccgtgttccagtttgaaagccggggcatgcagggc
atgctgcgtgacgccaggccgacgcggctggaagacctgatcgccatgaacgcgctgtac
cggccgggcccgatggacctgatcccgacctacatcgcacgcaagcaggggcgcgaaccg
gtggtgtacccggatccgcgcgtggaggccatcctgtccgagacctacggcgtcatgatc
taccaggagcaggtgatgcagatggcgcagatcctgggcggctactcgctcggcggcgcc
gacctgctgcgccgtgccatgggcaagaagaaggccgaggagatggccaagcatcgccag
atctttcgcgatggcgcggcgcaaaagggcatcgccacggacaaggccgacgccgtgttc
gacgacatggaaaaattcgcgggctacggcttcaacaagtcgcactcggccgcctacgcg
ctgctggcgtatcacacggcctggctcaaggtgcactacacggccgagttcttctgcgcc
aacatgacggtggaaatggacgacaccgacaagctgcgggtgctgcacgaagatgccctg
aagatgggcatgacgttcgaggcgcccgatgtgaaccgcggctttcaccgcttcgagccg
atctccgacaccgtgattcgttacggcctgggcgccgtcaagggtaccggccagcaggcc
atcgacgccatcgtggcggcgcgccaggaaggcggcccgttcaggagcctgttcgatttt
tgcgtacgcgtggaccgcagcaagttcaacaagcgcgcgctcgaggcgctgatcaaggcc
ggtgccttcgattcgctgcagctcaaccgcgcggccctgatcgcctcggtggaccgcgcg
ttcgacttcgccaccgccgcacaggccaacgtgaaccagggcggcctgttcgacatgggc
gatgacgatcacggctccagcacgcaggagcccgatctggtggacgccacgccatggggc
gtgaaggagcgattgacctacgagaagacggccatcggcttttacctgtcgggccatctg
ttcgacgaggtgtcgcacgaggtgcggcagttcatcaagcgcacggtcgacgagttgatc
gacagccgcgagcagcagctgatcgccggcgtggtgagtgatttccgtgtgatcaacagc
cagcgtggcaagctcgcgctgttcaagctggacgacaagtcgggggcgatcgaggccacg
gcggacgaggccgtgctcaacacccaccgcaatctgctcaaggacgacgaggtgctgatt
gtgagcggacggctgcagccggggcgcggcggtttcgagccgcgcttcagcatcagccag
gtctgggacctggccacggcacgctgccgctttgggaagttcctgcgcgtggcggtgaac
ggcaaggcgccggacatcgcgcgcctggtgaaggattttccgccccggcgcgagacgacg
gagcagggtgaattgttgcgcggcctgggtgtgcggctcagtgtgcagcggcaggcgggc
agcaccggcgcggcggccgagttgcaactcggcgacgaggccagattcttcccgaccgat
gccgcgctggcgagctggatggcgcaggccgaccagcggcaggcggctatcgtgtatgac
tga
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