Rhodoferax sediminis CHu59-6-5: EUB48_09480
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Entry
EUB48_09480 CDS
T06165
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUB48_09480 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhf03021
]
EUB48_09480 (rho)
03019 Messenger RNA biogenesis [BR:
rhf03019
]
EUB48_09480 (rho)
Transcription machinery [BR:
rhf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EUB48_09480 (rho)
Messenger RNA biogenesis [BR:
rhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EUB48_09480 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
Spore_III_AA
Phage_T4_IpIII
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QDL37476
UniProt:
A0A515DAS3
LinkDB
All DBs
Position
complement(1969019..1970281)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRARAGEQVIADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVN
GGGPEENKHKVMFEALTPLFPKEQMKLERDIKGEENITGRIIDIIAPIGRGQRALIVAPP
KSGKTVMMQHIAHAIAANYPDVHMMVLLVDERPEEVTEMQRSVKGEVIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELHLDRRLYEKRVFPAIQL
NRSGTRREELLLAPEILQKTRILRQFLFNMDEIESMELMLKNMKATKSNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaacgaactcaaggcactgcacgtgtctgaagtcctcaaacaggctgaagag
ctggagattgagaacaccggccgcatgcgcaagcaggaactgatgtttgccatcatcaag
aagcgcgcgcgcgccggcgagcaggtgattgccgacggcgtgctcgagatcctgcccgac
ggctttggcttcttgcgcagcccggacaccagctacaccgccagcaccgacgacatctac
atcagcccgagccaggtgcgccgcttcaatctgcacaccggcgacatgatcgaaggcgaa
gtgcgtacaccgaaagacggcgagcgctactttgccctgaacaagctcgacaaggtgaac
gggggcggccccgaagagaacaagcacaaggtcatgttcgaagccctgacgccgctgttc
ccgaaggagcagatgaagctcgagcgcgacatcaagggcgaagaaaacatcaccgggcgc
atcatcgacatcatcgccccgatcgggcgcggccagcgcgcgctgatcgtggcgccgccc
aagagcggcaagaccgtgatgatgcagcacatcgcccacgcgatcgcggccaactacccg
gacgtgcacatgatggtgctgctggtcgatgagcgccccgaggaagtgaccgagatgcag
cgttcggtcaagggcgaggtgatcgcctcgaccttcgacgagccggccgcgcgccacgtg
cacgtggccgaaatggtgatcgagcgcgccaagcgcctggtcgaactcaaaaaagacgtg
gtcatcctgctcgactcgatcacccggctggcgcgcgcctacaacaacgtggtgccgtcc
agcggcaaggtactgtcaggcggcgtcgactccaacgcactgcagcggcccaagcgcttt
tttggcgcggcccgcaatgtggaagaaggcggctcgctgaccatcatcgccacggcgctg
gtggataccggcagccgcatggacgaggtgatttttgaggagttcaagggcaccggcaac
tccgaactgcacctggaccggcgcctgtacgaaaagcgcgtgttccccgcgatccagctc
aatcgcagcggcacgcgccgcgaagaattgctgctggcccccgaaatcctgcaaaaaacc
cgcattcttcgccaattcctgttcaacatggacgagatcgagtcgatggagctcatgctc
aagaacatgaaggccaccaaatccaatgtcgatttcttcgacatgatgcgccgcggcggc
tga
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