Rhodoferax sediminis CHu59-6-5: EUB48_10915
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Entry
EUB48_10915 CDS
T06165
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
EUB48_10915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhf03400
]
EUB48_10915
Enzymes [BR:
rhf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
EUB48_10915
DNA repair and recombination proteins [BR:
rhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
EUB48_10915
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EUB48_10915
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EUB48_10915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DUF7540
DosC_2nd
Motif
Other DBs
NCBI-ProteinID:
QDL37721
UniProt:
A0A515DBD6
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Position
complement(2272234..2273670)
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AA seq
478 aa
AA seq
DB search
MHTFLWHDYETFGTQVRRDRPAQFAAIRTDADLNEIGEPLMLYCQPAPDFLPDPQSCLIT
GITPQLCLARGVPEHQFAAQIEQALAEPGTIGVGYNTIRFDDEITRFMFWRNLIDPYARE
WQNECGRWDLLDVVRTAYALRPDGIHWPKNAQGGASFKLTDLTAANGLIHEAAHDALSDV
RATIALARLLRTANPNLFEFCLRLHKKDRVAKELGLPTSQQTARPFLHVSGMFPAERGCL
AVMWPLANHPTNKNELLAWDLARNPSELPLLDVATLRQRLFSKSIDLPEGVQRLPLKSVH
LNKSPMVIRTLERLSPEMAAKWGIDIDAALANAEIARGLPDMSAIWQEVFRRPPEPTPDV
DEDLYGGFVGNNDRRKLTQLRSLSPEKLASARTGFDDPRLEELLFRYRARNFPATLSDDE
ARRWEEHRAARLFEGEGGARTVEQLFTEVDQLSEAADERGEEILGALYDYTESIAPSR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgcacacctttctctggcacgactacgaaaccttcggcacccaggtgcggcgcgaccgg
ccggcccagtttgcggccatccgcaccgacgccgatctcaacgagatcggcgaaccgctg
atgctgtactgccagccggcgcccgatttcctgcccgacccgcagtcgtgcctgatcacc
ggcatcacgccgcagctgtgcctggcgcgcggcgtgccggagcaccagtttgccgcgcag
atcgagcaggcgctggccgagcccggcacgattggcgtgggctacaacaccatccgcttc
gatgacgagatcacgcgtttcatgttctggcgcaacctgatcgatccgtatgcgcgcgaa
tggcaaaacgagtgcgggcgctgggacctgttagatgtggtgcgaaccgcgtacgcgctg
cgcccggacggcatccattggcccaaaaatgcgcagggcggcgccagcttcaagctcacc
gacctgacggccgccaatgggctcatccacgaggcagcgcacgacgcgctgtccgacgtg
cgcgccactatcgcgctggcgcggctgcttcggacggctaaccccaatctttttgaattt
tgcttgaggctacacaaaaaggaccgtgtcgctaaagagttgggcttgcccactagccaa
caaacagcgcgaccgtttttgcacgtgtcgggtatgttcccggccgagcgtggctgtctc
gccgtcatgtggccgctggccaaccacccgaccaataaaaatgagttgctggcatgggac
ctggcgcgtaacccaagcgagctgccgttactggacgtcgccacgctgcgccagcgtttg
ttcagcaagtcgattgatttgcctgagggcgtgcagcgcctgccactgaagtcggttcac
ctaaataagtcgcccatggtgatacgcacgcttgaaagattgtcacctgagatggcggcc
aagtggggcatagacattgacgctgcgcttgccaatgccgaaatagcccgtggcttgccc
gacatgagcgcgatctggcaggaagtcttccgccgccccccggagcccacacccgatgtg
gacgaggatttgtacggcggcttcgtcggcaacaacgaccggcgcaagctcacgcagctg
cgcagcctctccccggagaaactggcctctgcccgcaccggttttgacgacccgcggctg
gaggaactgctgtttcgctaccgcgcgcgcaactttcccgccaccttgtcagacgacgag
gcccggcgctgggaagaacaccgcgcggcccgcctgttcgaaggcgagggcggtgcgcgc
acggtggagcagctgttcaccgaggtcgatcagttgtcggaagcggccgacgagcgcggc
gaagagatcctgggcgcgctgtacgactataccgagagcatcgcgccctcgcgctga
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