Rhodoferax sediminis CHu59-6-5: EUB48_14630
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Entry
EUB48_14630 CDS
T06165
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUB48_14630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhf03019
]
EUB48_14630
Enzymes [BR:
rhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EUB48_14630
Messenger RNA biogenesis [BR:
rhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EUB48_14630
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
AAA_22
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
QDL38390
UniProt:
A0A515DDF1
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All DBs
Position
3030311..3032029
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AA seq
572 aa
AA seq
DB search
MNFEELNLAPAIVKAVHELGYETPTAIQAQAIPVVLDGHDMLGGAQTGTGKTAAFVLPML
QRLSAAEAPKNKFGGKGIRALVLTPTRELAAQVEESVRTYGKYLELTSTVVFGGVGMNPQ
ITKVKKGVDILVATPGRLLDLLQQGVLDLGQVQILVLDEADRMLDMGFIHDVKKVLAVVP
KDKQSLLFSATFSDEIRDLADTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH
IIQEQNWSQVLVFTRTKFGANNVAEFLTKNGIQAMALHGNKSQAARTQALSGFKSGDIRA
LVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGADGAAVNLVCLDEEGFMQ
DIERFTKQQIAVKIIEGFMPEPGEKAEPIAMGRQTIWGGAGKPPSRDVMQAAAKAARSEM
MQRVRDNKATQGDRGGNGNGRGGPRGGQRSSAPHSDPAARGPRPAQGRGRSGGGNGGGYR
DGAGAGQPDHNRTASGANLNPAPRAPQGGQPDPMRTSVDSMAEQRGRRSGGGFGGGNRNG
GSYGGSGGGTGGFGGRGNGSRGPGGSRGSFGR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaagaattaaacctggctccggccatcgtcaaggctgtgcacgagcttggc
tacgagacccccacggccattcaggcacaagccattccggtggtgctggacgggcacgac
atgctcggcggcgcccagaccggcaccggcaagacggcagccttcgtgctgcccatgctg
cagcggctgagcgcggccgaggcgcccaagaacaagttcggcggcaagggcatccgcgcc
ctggtgctgacgcccacgcgggagctggccgcgcaggttgaggaatcggtccggacctat
ggcaaatatctggagttgacctcgaccgtagtgtttggcggcgtcggcatgaacccccag
atcacgaaggtcaaaaagggcgtcgacatcctggtcgccaccccgggccgtctgctggat
ttgctgcagcaaggcgtgctggacctcggtcaggtgcagatcctggtgctcgacgaggcc
gaccgcatgctggacatgggcttcatccacgacgtcaagaaagtgctggccgtggtgccc
aaggacaagcaaagcctgctgttctccgccaccttcagcgacgagatccgcgacctggcc
gacaccctgctgaagaatccgcagagcatccaggtcacgccgcgcaacaccacggtgcag
cgcatcacccaggtgattcacccggtcggccgcggcaagaaaaaggcgctgctggcgcac
atcatccaggaacagaactggagccaggtactggtcttcacgcgcaccaagttcggcgcc
aacaacgtggccgagtttctgaccaagaacggcatccaggcgatggccctgcacggcaac
aagagccaggcggcacgcacgcaggcgctgagcggcttcaagagcggcgacattcgcgcg
ctggtggccaccgacattgctgcgcgcgggatcgacatcgacgatctgccgcacgtggtg
aactatgaaatcccgaacgtcagcgaagactacgtgcaccgcatcggccgcaccggtcgc
gcaggagccgacggcgccgccgtgaacctggtgtgcctggacgaagaaggcttcatgcag
gacatcgaacgcttcaccaagcagcaaatcgctgtcaagatcatcgagggcttcatgccg
gaacccggcgaaaaagccgagccgattgccatgggccgccagaccatctggggcggcgcg
ggcaaaccgccgagccgcgacgtcatgcaggccgcggccaaggccgcgcgcagcgagatg
atgcagcgcgtgcgcgacaacaaggcgacccagggcgaccgcggcggcaacggcaatggc
cgtggcggcccgcgcggcggccagcgcagcagcgcgccgcacagtgacccggcagcgcgc
gggccgcgtcctgcccagggccgcggacgctcggggggtggcaacggcggcggttaccgt
gacggcgcgggcgcgggccaacccgatcacaatcggacggccagcggcgccaacctgaat
ccggcgccgcgtgcgccccagggtggccagccggacccgatgcgcaccagcgtggacagc
atggcggaacaacgcggccgcaggagtggcggcggtttcggtggcggcaatcgcaatgga
ggctcttatggcggatcaggcggcggcacgggtggctttggtggccggggcaacgggtct
cgtgggccgggaggttctcgcggctcttttggccgataa
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