Rhodoferax sediminis CHu59-6-5: EUB48_17550
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Entry
EUB48_17550 CDS
T06165
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUB48_17550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhf03019
]
EUB48_17550
03009 Ribosome biogenesis [BR:
rhf03009
]
EUB48_17550
Enzymes [BR:
rhf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EUB48_17550
Messenger RNA biogenesis [BR:
rhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EUB48_17550
Ribosome biogenesis [BR:
rhf03009
]
Prokaryotic type
rRNA processing factors
EUB48_17550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QDL38893
UniProt:
A0A515DEQ4
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All DBs
Position
3635710..3638832
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AA seq
1040 aa
AA seq
DB search
MKRMLINATQTEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAQGVPVSQARIQDVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPAGASIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAGKSGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDVYDQAQ
QFMAHVMPEHAARVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIRGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTASVLCQVPVEVASFLLNEKRTEIAKIELKQRINVLMVPNKTLETPN
YRLERLKHDDPRLDGMEVSYKMAEEVEDPTTVTRRSQERSNKQEPVIKGVLPDAPAPVAV
PKPQPVPAAPVEKTAPAAMAAPVPAESGFFGWIKGLFGSKPAAAPVVVAAEPKKDDKREG
RTGRDGEGRGGRDGERRDGRRGEGRGEGRGGRRGEGRGEGRGGRDGERRGEERAEGRAEG
AEVEGQGPRGEGRGGRGGRGGERRNDRQGPRERRDGEGRPPAPDNATATSPMTGTPQAVE
GAGNEQPRQERAPRSGERGERGERRERGGRGERGERTEGRGERGERSDRGDSQPESRGER
RNDRSGDHAPGTDEAANRSEPLSVGAEVAAAAMATVGVAAEAGEGHAGDMSAERTDGQRE
PRERRSRDRYGRDRRERAPRDASEAAETAPSGVPEAGQPAAQHEPVQRRSYFDTAAPAAS
EPAAVEPAASQAPVSAIPVQAPIPGATAPVAPVHVAAAPVAAPAVASSAPALPKVASFEL
PLAELAQVATGSGLQWVNSDAGKIAAARAAMAAEPRAVHVPRERAPVVVQDDGPLILVET
KRDLRDMTLPFEQASHEATP
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaacgccacccagaccgaagaacgccggctggcgatcgtggac
gggcaaaagctgctcgactacgaaattgaaattgaagggcgcgagcagcgcaagggcaac
atctacaaggccgtcgtcacccgcgtcgagccctcgctggaagcctgctttgtcgactac
ggcgaagaccgtcacggctttttgccgttcaaggaaatctccaaacagtacttcgcccag
ggcgtgccggtcagccaggcgcgcatccaggacgtgatcaaggaaggccaggaactgctg
gtgcaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccacctttgtctcg
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggcggtggcgtcagccgg
cgcatcgagggcgatgaccgggccgagctcaaggaagccatggaccagctggaataccct
gccggtgccagcatcatcgcgcgcaccgccggcatcgggcgcagcgcgcccgagttgcaa
tgggacctgaactacctgctcaagctgtggaccgcaatcgacggtgccggcaaaagtggc
aagggtgcgttcctgatttaccaggaatcgagcctggtgatccgcgccatccgcgactac
ttcaacaacgatatcggcgacatcctgatcgacaccgacgacgtgtacgaccaggcccag
cagttcatggcgcacgtgatgcccgagcacgccgcgcgcgtcaagcgctaccgcgacgac
gccccgctgttcagccgtttccagatcgagcaccagatcgagtcggcttacgcgcgcacc
gtgcagctgcccagcggcggggccatcgtgatcgaccacaccgaggcgctggtttcggtg
gacgtgaactcggcgcgcgccatccgtggcggcgacatcgaggaaaccgcgacccgcacc
aacctggaggccgccgacgaagtggcgcgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagagtcgcgcaatcgccgcgacgtggaaaaccgc
ctgcgcgatgcgctgcggcaggaccgtgcgcgcgtgcagttcggcaccatcagcaagttc
ggtctcatggaaatgagccgccagcgcctgaagcccgcgctgtccgaaggtgcctccatc
ccctgcccgcgctgcggcggctcgggccacatccgcgacacggaaagctcggcactgcag
atcctgcgcatcatccaggaagagtccatgaaggacaacaccgcttccgtgctgtgccag
gtgccagtagaagtggcgtccttcctgctcaacgagaagcgcaccgagatcgccaagatc
gaactcaagcagcgcatcaacgtgctgatggtgcccaacaagacgctggaaaccccgaac
taccggctcgagcgcctgaagcacgacgacccacgcctggacggcatggaagtcagctac
aaaatggcggaagaagtcgaggatccgaccaccgtgacgcgtcgctcgcaggagcgcagc
aacaagcaggagcccgtcatcaagggtgtgttgcccgatgcacccgccccggtggctgta
cccaagcctcagcccgtcccggctgctccggtggagaagacggcgccagccgccatggcg
gcgccggtgcccgcggaaagcggcttctttggctggatcaagggcctgtttggcagcaaa
cccgctgccgcgccggtggtggtggccgcagaaccgaaaaaagacgacaaacgcgaaggc
cgcacgggacgcgacggcgaaggccgtggtggtcgcgacggtgaacgccgcgatggtcgc
cgtggagaaggccggggcgaaggccgcggtggccgccggggcgaaggccgtggcgagggt
cgtggcggccgcgacggtgagcgccgcggcgaagagcgcgccgaaggtcgcgcagaaggc
gccgaggtagaaggccagggcccgcgcggcgaaggtcgcggtggccgcggtggccgtggc
ggtgaacgccgcaacgaccgccagggaccccgtgaacgccgtgacggcgaaggccgcccg
ccggcacccgacaacgcgacagcgaccagccccatgacgggtacgccgcaggccgtggaa
ggcgccggcaatgagcagcccaggcaggagcgtgcgccgcgcagcggcgagcgcggtgag
cgcggtgagcggcgcgaacgtggaggccgcggcgaacgcggtgagcgcaccgagggccgt
ggtgagcgtggtgagcgcagcgatcgtggcgacagccagcccgagagccgcggcgagcgt
cgcaatgaccgcagcggcgaccacgcaccgggcacggacgaggccgctaatcgcagtgaa
ccgctgtctgtcggcgccgaggtggccgcagcggccatggcaacggtcggcgttgcagcc
gaggcgggcgaaggccacgccggtgatatgtcggccgagcgcacggatggccagcgcgaa
ccgcgcgagcgccgctcgcgtgatcgctatggccgcgaccgccgcgaacgcgcgccgcgc
gatgcctcggaggccgctgaaacagcaccatccggcgtgccggaggccggccagcctgcg
gcccagcatgaaccggtgcagcgcaggtcgtatttcgacacggccgcgccggcagccagc
gaaccggccgccgttgaacctgcagccagtcaggcacccgtgagcgccatcccggtgcag
gcaccgattcccggtgcgaccgcacccgttgcgcccgtgcacgttgcggcggccccggtt
gccgcacccgccgtcgcctcgtcggcgcccgcgctgcccaaggtagcctccttcgaactg
ccgctggccgagctggcgcaggtcgccacgggctcgggcctgcaatgggtgaattccgac
gccggcaagatcgccgccgcgcgcgccgccatggcggccgagccgcgcgccgtgcatgtg
ccgcgcgagcgcgccccggtcgtggtgcaggacgacggccccttgatcctggtggaaacc
aaacgcgatctgcgcgacatgacgctgccgttcgagcaggcctcgcacgaagcgacaccg
taa
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