Rhodoferax sediminis CHu59-6-5: EUB48_18215
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Entry
EUB48_18215 CDS
T06165
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EUB48_18215
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
rhf02022
]
EUB48_18215
02035 Bacterial motility proteins [BR:
rhf02035
]
EUB48_18215
Two-component system [BR:
rhf02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
EUB48_18215
Bacterial motility proteins [BR:
rhf02035
]
Pilus system
Twitching motility proteins
EUB48_18215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
AAA
AAA_16
AAA_19
HTH_30
AAA_3
PDE8A_N
DUF4229
Motif
Other DBs
NCBI-ProteinID:
QDL39014
UniProt:
A0A515DF27
LinkDB
All DBs
Position
3778220..3779650
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AA seq
476 aa
AA seq
DB search
MSANPSPSPAQVLVVDDEPDLRDLYELTLTREGYHVDAAANLAQAWLCLKEKRFDAVITD
MRLPDGLGMELLTGMQAQQRAERCIVMTAYGSAENAVEALKAGAFDYLTKPVDLKQFRTV
VASAIQDTGQIYKSGRGTPGPAKAAGALDRLDSEPASLRRMVGDSEPMRLVKQRIVKVAR
SMAPVLVRGESGTGKELVARAIHACSHRAEAPFVAVNCGAIPENLLEAEFFGAKKGSYTG
ATQDRDGYFQAARKGTLFLDEIGDLPLAMQSKLLRAIQERSVRSLGSTQEDAVDVRIVSA
THKDLAADVAAGRFRQDLFFRLNVIEIAVPPLRERRSDLPALCEALLAKIAQESDMPVPA
LSSALLAQLASHPLSGNVRELENLLHRAVALSDGSELHVDFVPGQPSNGPPAVTGDLQSY
LDQQEREVLVKTLTETGFNRTAAAARLGLNLRQIRYRIARLNITTPFGDDAHDDTP
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccaacccttccccctccccggcgcaggtcctggtcgtcgacgacgagcccgac
ctgcgcgacctgtatgagctcacgctgacccgcgagggctatcacgtggacgccgcggcc
aatcttgcccaggcctggctttgcctgaaagaaaagcgcttcgatgcggtgattaccgac
atgcgcctgcccgacggcctgggcatggaactgctcaccggcatgcaggcacaacagcgt
gcggagcgctgcatcgtgatgacggcctacggctccgccgaaaacgcggtggaagccctg
aaggccggcgcgttcgactacctcaccaagccggtggacctgaagcagttccgcacggtg
gtggcctccgccatccaggacaccggccagatttataaaagtgggcgtggcacaccgggt
ccggccaaggccgccggcgcgctggatcggctggacagcgaaccggcttcgctgcggcgc
atggtcggtgactccgagccgatgcgcctagtcaagcagcgcatcgtcaaggtggcgcgc
agcatggcgccggtattggtacgcggcgagtccggcaccggcaaggaactggttgcgcgc
gccatccacgcctgcagccatcgcgcggaggctccctttgtcgccgtgaactgcggcgcc
attccggagaatctgctggaggccgaattcttcggcgccaaaaagggctcctacaccggc
gccacccaggatcgtgatggctacttccaggcggcgcgcaagggtacgttgttcctcgat
gaaatcggcgacctgccgctggccatgcagtccaagctgctgcgcgccatccaggagcgc
agcgtgcgctcactgggctcgacgcaggaagatgcggtggacgtgcgcatcgtcagcgcc
acgcacaaggatctggccgccgatgtagcggccgggcgctttcggcaggacctgtttttc
cgtctcaacgtgattgagattgcagtgcccccgctgcgcgagcggcgcagcgacctgccg
gccctgtgcgaggcgctgctggccaaaattgcccaggagtccgacatgccggtgcccgcg
ctctcaagcgccctgctggcgcaactggcctcgcaccccctgagcggcaacgtccgcgag
ctcgaaaacctgctgcatcgcgccgtggcgctaagcgacggcagcgagttgcatgtggac
tttgttccgggtcagccctccaacggcccgcctgccgtgacgggcgatctgcaaagctat
ctggaccagcaggagcgcgaagtgctggtcaaaacgctcaccgagaccggcttcaaccgc
accgctgcggcggcacggctgggtttgaatctgcgccagatccgttaccgcattgcacgc
ctgaacatcaccaccccgtttggtgacgatgcgcatgacgataccccctga
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