Rhodoferax sediminis CHu59-6-5: EUB48_19375
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Entry
EUB48_19375 CDS
T06165
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EUB48_19375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhf03021
]
EUB48_19375
03400 DNA repair and recombination proteins [BR:
rhf03400
]
EUB48_19375
Enzymes [BR:
rhf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EUB48_19375
Transcription machinery [BR:
rhf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EUB48_19375
DNA repair and recombination proteins [BR:
rhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EUB48_19375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DUF6165
DUF7286
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
QDL39227
UniProt:
A0A515DFS9
LinkDB
All DBs
Position
complement(4028392..4029381)
Genome browser
AA seq
329 aa
AA seq
DB search
MQTNLLKPKTINVEQLGLNRAKVTLEPFERGYGHTLGNALRRVLLSSMVGHAATEVTIAG
VLHEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGLVTAADIQTPHDVEI
INPNHVIATLSQGGKLDMQIKIEKGRGYVPGNMRRYGDEPAKSIGRIVLDASFSPVKRVS
YIVESARVEQRTDLDKLVLEIETNGAISAEDAVRASAKILVEQLAVFAQLEGGELAMFDT
PTPRSSQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSL
NEIKEVLASRGLTLGMKLESWPPAGLDKR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaatctgctaaaaccaaaaacaatcaacgtggagcaactcgggctcaaccgg
gccaaagtcacactggagcctttcgagcgcggctatggccacaccctgggcaacgccctg
cgccgcgtgttgttgtcgtccatggtgggtcacgctgcgaccgaagtcaccattgccggc
gtgcttcacgagtattcgtccatcgatggcgtccaggaagacgtcgtcaatatcctgctg
aatctcaagggcgtggtgttcaaactgcacaatcgcgatgaagtcacgctgagcctgcgc
aaagatggcgaaggcctcgtgacggcggcggacatccagaccccgcacgatgtcgaaatc
atcaatccgaatcatgtcattgccacgctgtcgcaaggcggcaagctggacatgcagatc
aagattgaaaaaggccgtggctacgttccgggcaacatgcgccggtatggcgacgagccc
gcaaagtccatcggccggattgttctggacgcgtcattttctccggtcaagcgcgtcagc
tacattgtggagagtgcccgtgtcgagcagcgcacggacctcgacaagctcgtgctggaa
attgaaaccaatggtgccatctcggctgaagatgcggttcgcgcctcggccaagatcctg
gtggaacaactggccgtgttcgcgcagcttgaaggcggtgagctggccatgttcgacacg
ccgacgccgcgcagttcacagcagttcgacccaatcctgctgcgtccggtcgacgagctg
gagttgacggtgcgttccgccaactgcctgaaggccgaaaacatttactatatcggcgat
ttgatccagcgcaccgaaaacgagctgctcaagacgccgaatctgggccgtaaatcgctc
aacgagatcaaggaagttctggcctcgcgcggtttgacacttggcatgaagctggaaagc
tggccgccggcgggtctggataaacgctga
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