Rhodoferax aquaticus: EXZ61_15365
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Entry
EXZ61_15365 CDS
T06176
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhg
Rhodoferax aquaticus
Pathway
rhg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXZ61_15365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhg03019
]
EXZ61_15365
03009 Ribosome biogenesis [BR:
rhg03009
]
EXZ61_15365
Enzymes [BR:
rhg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EXZ61_15365
Messenger RNA biogenesis [BR:
rhg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EXZ61_15365
Ribosome biogenesis [BR:
rhg03009
]
Prokaryotic type
rRNA processing factors
EXZ61_15365
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
HTH_PLP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
QDL55438
UniProt:
A0A515ES24
LinkDB
All DBs
Position
3331563..3334610
Genome browser
AA seq
1015 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFQQGVSVSQARIQDAIREGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEALDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWGAIDGAAKGGKGAYLIYQESSLVIRAIRDYFNNDIGDILIDTDDVYEQAQ
QFMAHVMPEHAARVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGSDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRIIQEESLKDNTASVLCQVPVDVASYLLNEKRTEIAKIELKQRINVLMVPNKTLETPN
YRLERLKHDDPRLDHIEASYKMAEEIEDPTSVTRRSQEPTNKQTPIIKGVLPDAPAPVAV
PKPEATKAAALVPRAQVPATSSAAAGKGFFGWLKALFVGSDTPATKPVATTPAPKADEKR
EDRNARNGNRQGGRNGEARSDARPEGRNDTRGARPAGRNDNRDTRGGRGGRGGRNEGAAG
AQRERFDGEGRAAEGVTPTLDANQAQQEQARSEGRPERGPRNERGDRNNRQQGRGGDRQE
SAERNQDGRNEARTEAPADERANRNAEGDANARSDAPEAREGRNSRGRGNRGGRGPRQDD
ANRVANGESQAQLGFGEANGSEATASTAEATQSPAPAGNVRNEGQEPREKRSRDRYGRDR
GPRGDRAPRNESAQAEVNGESAAQATDVSHAGQGNAPAPTPVEVAAPVASHAVTAPAVNT
VEPAQMGAAAPQAVARQASPTAAAPNSVGMPRVASYTLPSETMEQIAQAAGLQWVNSNAE
RVAAVRAAIEAEPKPVHVPRERPAPVEPDNSPLILVETKRDLRNMTLPFEATQEA
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaacgctacgcaggcggaagaacgccgcttggccatagtcgat
ggacaaaaactactcgactacgaaattgaaattgaaggccgcgaacagcgcaagggcaac
atctacaaagcggtggtcacccgcgtagagccatcgcttgaagcctgctttgttgactac
ggtgaagatcgccacggcttcttgccgttcaaggaaatctcaaggcaatacttccaacaa
ggtgtttcggttagccaagcgcgcatccaagatgcgatccgcgaaggccaagaactcttg
gtgcaagtggaaaaagaagagcgtggtaacaaaggcgcagcgctgaccacatttgtttcg
ctggctggtcgctacgtcgtgctgatgcccaacaacccccgtggtggtggcgtatcgcgc
cgcattgaaggtgatgaccgcgcagagctcaaagaagcactggaccaactggaatacccc
aacggcatgagcatcattgcccgcacagctggcattggccgaagtgcgcctgagttgcag
tgggacttaaactatttgctcaagctttggggtgccattgacggtgcagccaaaggtggc
aagggtgcctatctgatttaccaagagtcgtccttggtgatccgcgcgatccgcgactat
ttcaacaacgacatcggcgatattctcatcgacaccgatgacgtgtacgagcaagcgcaa
cagttcatggcgcatgtgatgcctgaacacgcagcacgcgtcaaacgttaccgtgacgac
gcaccgctgttcagccgcttccaaattgaacaccaaatcgagtctgcttacgctcgcacc
gtgcaactgccaagcggcggcgcgattgtgatcgaccacaccgaagccctggtgtccgta
gacgtcaactcggcccgcgccatcaaaggcagcgacatcgaagaaaccgccacacgcacc
aacttggaagctgccgacgaagtagcgcgccaaatgcgtttgcgtgacttgggtggcttg
atcgtgatcgactttatcgacatggaagaaagccgcaaccgccgtgacgtggagaaccgc
ctgcgcgacgccctgcgccaagaccgcgcccgtgtgcaatttggcaccatcagcaaattc
ggcttgatggaaatgagccgccaacgtttgcgccctgctttgagcgaaggtgcatccatc
ccctgcccacgctgcggcggctctggccacatccgcgacacagagtcaagcgcgttgcaa
attctgcgcatcattcaagaagagtccctgaaagacaacaccgcttccgtcctgtgccaa
gtgcctgtggatgttgcgtcttacttgttgaatgaaaagcgcaccgaaatcgccaagatt
gagttgaagcaacgcatcaacgtgctgatggtgcccaacaagaccttggaaacaccgaac
taccgcttggagcgcctcaagcacgatgatccacgtttggaccacatcgaagccagctac
aagatggccgaagaaatcgaagaccccacttcggtcactcgccgctcgcaagaacccacc
aataagcaaacgcccatcatcaagggcgtgttgccggatgcacctgcgcccgttgctgta
ccaaagccagaggccacaaaagctgctgcattagttccacgcgcgcaagtgcccgcaaca
agcagcgctgccgctggcaaaggcttctttggttggctgaaagcgttgtttgttggcagc
gacacacctgccaccaagcccgtggccaccacacctgcacccaaggcggatgaaaagcgt
gaagaccgaaacgcacgcaatggcaaccgccaaggcggacgcaacggcgaggcacgttcc
gatgcacgcccagaaggccgcaatgacacccgtggtgcccgcccagcgggccgcaacgat
aaccgtgacacacgcggtggtcgtgggggtcgcggtggacgcaatgaaggcgcggctggc
gcccaacgtgagcgctttgacggtgaaggtcgcgcagcagaaggtgtgacacccaccttg
gatgcgaaccaagcgcaacaagagcaagcgcgcagcgaaggccgaccagagcgtggtcca
cgcaatgagcgtggagaccgcaacaaccgccagcaaggccgtggcggcgatcgccaagag
tctgcagagcgtaaccaagacggccgcaatgaagctcgcacggaagcaccagctgacgag
cgcgctaaccgcaacgccgaaggcgacgccaatgcacgttcagacgctcccgaggcacgt
gaaggtcgcaactcccggggacgcggcaaccgtggcggacgtgggcctcgccaagacgat
gcgaaccgggtggccaatggcgaatcacaggcacaactaggcttcggcgaagccaatggt
tcggaagccacggcctccacagcggaagcaactcagtccccagcacctgctggcaacgtc
cgcaatgaaggccaagagccacgcgaaaagcgttcccgcgaccgttacggccgtgaccgt
ggccctcgtggcgaccgcgctccgcgcaatgagtcagcgcaagctgaagttaacggtgag
tctgccgcgcaagcgacagatgtttcccacgcaggccaaggcaatgcacctgctcccacg
cctgtggaagtggcagcgccagtcgctagccatgccgttacagcacctgctgtcaacacg
gtagagccagcgcaaatgggcgccgccgcacctcaagctgtggcgcggcaagcaagcccc
acggcagctgcgcccaacagcgtcggcatgcctagggtggcgagctacacattgcctagc
gaaacaatggaacaaatcgcccaagccgctggtctgcaatgggttaactccaacgctgag
cgcgtagctgcagtgcgcgctgccattgaggcagaacctaagccagtgcatgttccccgc
gaacggccagctccagtggagccagacaacagcccactcatcttggtagaaaccaagcga
gacctacgcaacatgaccttgccgtttgaggcaacacaagaagcgtag
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