Rhodoferax aquaticus: EXZ61_19910
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Entry
EXZ61_19910 CDS
T06176
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhg
Rhodoferax aquaticus
Pathway
rhg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EXZ61_19910 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhg03021
]
EXZ61_19910 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhg03400
]
EXZ61_19910 (rpoC)
Enzymes [BR:
rhg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EXZ61_19910 (rpoC)
Transcription machinery [BR:
rhg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EXZ61_19910 (rpoC)
DNA repair and recombination proteins [BR:
rhg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EXZ61_19910 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QDL56241
UniProt:
A0A515EUA7
LinkDB
All DBs
Position
complement(4329240..4333466)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFEAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDFDAKFKEYGDEFQAKM
GAEGIKDLLQSIDIDGSIEKLRNDPTGSELKIKKNTKRLKLLEAFKKSGIKPEWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFARLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSVEAQMECRT
LMLASNNVLFPSNGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDTGEVQRAFDAGQV
ELNAKINVRLTEYTKDKETGEFVPSVKLWETTAGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQYGFRLATKAGISICIDDMLVPTEKPGIIERAENEV
KEIAQQYTSGLVTTGERYNKVVDIWGKAGDEVSKVMMSQLSKEMVTDRHGNKVPQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHNGYLMRAIVEGGEVIESLRDRVLG
RTTADDVIHPENRSVLAVAGTMLDEDMIDDLEAAGVDELKVRTALTCETRFGICAKCYGR
DLGRGGLVNGGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAIAASVEAKSNGTIGFN
ATMRYVTNGKKELVVISRSGEIVIHDEHGRERERHKVPYGAVLTVKADQAIKAGAILANW
DPLTRPIITEFAGRAHFENVEEGLTVARQVDEVTGLSTLVVIDPKRRGSAKVIRPQVKLI
DASGNEVKIPGTDHSVTIGFPVGALVQVRDGQDVGSGEVLARIPIEGQKTRDITGGLPRV
AELFEARTPKDKGVLAEATGTVSFGKETKGKVRLQITDPEGRVWEELVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVESAGDSTYINGEQVERSEMLNTNDALRAEGKIPATYTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHEARAVREKMDDAERRA
IAEADAAELAGTAEEDADHSTSEGAAAE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattactagacctgttcaagcagttcacgcccgacgaacatttcgaagccatc
aaaattggaatggcttctccagagaagattcgttcctggtcgttcggtgaagttaagaag
cctgaaactatcaattaccgcacgttcaaacccgagcgcgacggcctgttttgcgccaag
atctttggacctatcaaagactacgaatgcttgtgcggtaagtacaaacgtctgaagcac
cgtggcgtcatttgcgaaaagtgcggcgtcgaagtgacccaaaccaaagtgcgccgtgag
cgcatgggccatatcgacttagcagcaccttgcgcccacatctggttcttaaagtcattg
ccaagccgtttgggcttggtgttggatatgacattgcgggacattgagcgtgtgttgtac
tttgaagcatacgtggtcacagatccaggcatgacgccactgaagaaattcagcatcatg
tcggaagacgactttgatgcgaagttcaaagagtatggcgatgagtttcaggccaaaatg
ggcgcggaaggcatcaaagatttgctgcaaagcattgacattgatggttctattgaaaag
ctgcgcaacgatcctaccggctcggagctcaagatcaaaaagaacaccaagcgtctgaag
ttgcttgaagcgttcaaaaaatctggtatcaagcccgaatggatggtgttggaagtgctg
cctgtactcccaccagatctacgtccattggtgccgctggatggtggtcgttttgcaacg
tccgacttgaacgacttgtaccgtcgtgtgatcaaccggaacagccgcctgcgtagattg
ctggagttgaaggccccagaaattattgcgcgcaatgaaaagcgtatgttgcaagaagcc
gtggacagcttgctggacaatggccgccgtggtaaagccatgactggcgcaaacaagcgt
gctctgaagtcattggccgacatgatcaaaggtaagagcggtcgcttccgtcaaaacctt
ttgggcaagcgtgttgactactctgggcgttccgtcattgtggtgggtccaacactcaag
ctgcaccagtgcggtttgccgaaactgatggccttggagttgttcaagcctttcatcttt
gctcgcttagaagccatgggcattgcgacaacgattaaagctgccaagaaagaagtcgag
tcaggcacaccggtggtctgggacatcttggaagaggtgatcaaagagcaccccgtgatg
ttgaaccgcgcacctacgctacatcgtttgggtatccaagcctttgagcctgtgttgatt
gaaggtaaagcgatccaattgcacccactggtctgttcggcgttcaatgctgactttgac
ggtgaccaaatggccgtacacgtacctttgtctgtggaagcgcagatggagtgccgtact
ttgatgcttgcgtcgaacaacgtcctgttcccatccaatggcgaaccgtccattgttccg
tctcaagacgtcgttctaggcctgtactacacgacacgtgaccgtatcaacggcaaaggt
gagggcctgatcttctccgacaccggagaagttcaacgcgcgtttgatgcgggtcaagtg
gaactgaacgccaaaatcaacgttcgtctaactgagtacaccaaagacaaagaaacgggc
gagtttgtgccctctgtaaagctgtgggaaaccaccgcaggtcgtgcacttttgtccgaa
atcttgccgaaaggcttgcccttctccaacatcaacaaggcgttgaagaagaaggaaatt
tcgaagcttatcaacgtctctttccgtaagtgcggattgaaagaaaccgttgtttttgct
gacaagttactgcaatacggcttccgtctcgcgaccaaggcaggtatttccatctgtatc
gacgacatgttggtgccaaccgaaaagcctgggatcattgagcgtgctgaaaacgaagtt
aaggaaattgcgcagcagtacacgtctggcttggtgacaaccggcgagcgctacaacaag
gtggtggacatctggggtaaggccggtgacgaagtctccaaggtgatgatgtcccagttg
tccaaagaaatggtgactgatcgtcacggcaataaagtgccgcaagagtctttcaactcc
atctacatgatggctgactcgggcgctcgtggttctgcagcccagattcgacaagttgct
ggtatgcgtggtttgatggctaagcctgatggctcgatcatcgaaacacctattactgcg
aacttccgcgaaggcttgaatgtgttggagtacttcatctccacccacggcgctcgtaaa
ggtttggctgatacggctttgaagacagctaactcaggctacctcactcgccgtttggtt
gacgttacccaagacttggttgttaccgagcaagactgcggtacgcacaacgggtacctc
atgcgcgcaatcgttgaaggcggtgaggttattgagtctttgcgtgatcgcgtattgggc
cgtacgactgctgacgatgtgatccatccagagaaccgttcggtattggctgtcgctggc
accatgctggacgaggacatgattgacgacttggaagctgcaggcgttgatgagttgaag
gtacgcacagccctgacttgcgagactcgctttggtatttgcgccaaatgctacggccgc
gatctgggccgtggtggcttggtgaacggtggtgaagcagtgggtgtgatcgctgcgcag
tcgatcggcgagccaggtacacagttgaccatgcgtacgttccacatcggtggtgcggca
tcgcgctctgcgattgcggccagcgtagaagcgaagtccaacggtaccattggcttcaac
gcaacgatgcgttatgtaaccaacggcaagaaagaattggttgtaatttctcgctccggt
gaaatcgtgattcacgacgagcatggccgcgaacgtgagcgccataaggttccatacggc
gctgtgttgaccgtgaaggccgaccaagcgatcaaagctggcgcgattttggcgaactgg
gatccattgactcgtccaatcattaccgagtttgctggacgtgctcacttcgagaacgtc
gaagaaggcctcactgttgcgcgccaagtggacgaggtcactggcctgtcaaccttggtc
gtgatcgatccgaaacgccgtggctctgccaaggtgattcgtccccaggtgaaactgatt
gatgcttccggcaatgaagtcaagatccctggcaccgatcactctgtgacgattggtttc
ccggtcggcgccttggttcaagtacgcgacggccaggatgttggttctggtgaggtgctg
gcacgtatcccgattgaaggccagaaaactcgcgatattaccggtggtctcccacgcgtg
gccgagttgtttgaagcacgtacacccaaggacaaaggtgtgttggccgaagccacagga
actgtttccttcggtaaagagaccaaaggtaaagttcgtctgcaaatcacggatcctgag
ggccgcgtgtgggaagagctcgtgccaaaggaaaagaacatcttggtgcatgaaggccag
gtggtcaacaagggtgagtccgtggtggacggaccggcagatccgcaagacatcttgcga
ttgctgggttccgaagagttggcccgttacatcgtcgacgaagtgcaggatgtctatcgc
ttgcaaggcgtgaagatcaacgacaagcacattgaagtgattgttcgccaaatgttgcgt
cgcgtcgttgtggagagtgccggtgactccacttacatcaatggcgaacaggtcgagcgt
tccgagatgctcaataccaacgatgctctgcgagcggaaggcaagatcccagcgacgtac
accaacttgctcttgggtatcaccaaagcatcgctgtccacggatagcttcattagcgca
gcgtccttccaagaaacgacgcgcgtgctgactgaagccgcaatcatgggcaagcgtgat
gagttgcgtggtctcaaggaaaacgtgattgttgggcgtttgattcccgcgggcacaggc
ttggcttaccacgaagcccgtgcagtgcgcgagaagatggacgacgcagagcgccgcgct
atcgccgaagccgatgctgcggaactcgcggggactgccgaagaagacgcagaccactct
actagcgaaggtgctgctgccgaatag
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