Rheinheimera sp. D18: E0Z06_00020
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Entry
E0Z06_00020 CDS
T05923
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rhh
Rheinheimera sp. D18
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhh03032
]
E0Z06_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_00020 (gyrB)
Enzymes [BR:
rhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
E0Z06_00020 (gyrB)
DNA replication proteins [BR:
rhh03032
]
Prokaryotic type
DNA Topoisomerases
E0Z06_00020 (gyrB)
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E0Z06_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
HATPase_c
Toprim
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QBL08013
UniProt:
A0A4P6VMD9
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All DBs
Position
3604..6021
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AA seq
805 aa
AA seq
DB search
MAEQHNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDETLAGHCTD
IWVTIHSDGSVSVRDNGRGIPTDMHEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG
VSVVNALSDKLELTIRRSGKVHQQIYHLGVPQMPLTVIGETEDKGTSLRFWPSPTVFSDI
NYHFEILAKRLRELSFLNSGVSIILNDERNDRKDHFKYEGGIEAFVQYLNRSKTSVHPKA
FYFTDQREDGISVEVAMQWNDSYSENVFCFTNNIPQRDGGTHLAGFRGALTRVLNTYIEQ
EGYAKKMKVQASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRSAVESVMAEKLNE
YLLENPGDAKIIVGKIVDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE
LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIG
REEYNPDKTRYHSIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKK
GKQEQYIKDEAALTEYLTTLALDEASLHVNPDAPGIGGEALEKLVRQYHRVSATITRLTR
KIPFNLLNELIYVPALDVVQAKGAAYSEQWAKTLVDRLEAKEGDGSSYRYDIHEDRERQL
FLPKVIIRQHGIDNEYLLHHDFVTSRDYLSIAELGDEIRDLMEADSFVRRGEKTKPVETF
LEALEWLMSESKRGLYIQRYKGLGEMNPEQLWETTMDPNTRRMLQVTIEDAIGADQLFAT
LMGDHVEPRRAFIEENALYVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacaacataattacgattcctcgagtattaaagtattaaaaggactggatgca
gttcgtaaaagaccgggtatgtacatcggtgacactgatgatggtacaggcttgcaccac
atggtgtttgaagtggttgacaacgctatcgatgaaacgttagctggccactgtactgac
atttgggtaaccattcatagtgatggttcggtgtcagtgcgcgataacggccgcggtatc
ccaaccgatatgcacgaagagggtgtatcggcggctgaagttattatgacagtactgcac
gcaggcggtaagtttgacgacaattcatacaaagtgtcaggtggtttgcacggcgtaggt
gtgtctgttgttaacgcgctgtctgataagcttgaactgactattcgccgcagtggcaaa
gtgcaccagcagatttaccatttaggcgtgccacagatgccgcttactgtcatcggagaa
accgaagacaagggtacatcattgcgtttctggccaagcccaaccgtgtttagtgatatt
aattatcactttgaaattttggctaagcgcttacgtgagctatcatttttaaactcgggc
gttagtattattcttaacgacgagcgtaacgatagaaaagaccattttaaatacgaaggt
ggtattgaagcctttgtgcagtatttaaatcgcagtaaaaccagcgtgcatccaaaagcg
ttttattttaccgaccagcgtgaagatggtatttcggttgaagttgcgatgcaatggaac
gatagctacagcgaaaacgtgttctgctttaccaataatattccacagcgtgacggtggt
actcacttagccggtttccgtggtgcgttaactcgcgtattaaacacctatattgaacaa
gaaggttacgccaaaaaaatgaaagtgcaggcgtcaggtgacgatgcgcgtgaaggccta
actgcggtagtaagtgttaaagttcctgatcctaagttcagttcacaaactaaagataaa
ctggtttcgtcagaagtgagatctgcagttgaaagcgtgatggcagagaagcttaatgaa
tatctgctagaaaaccccggtgatgcaaaaataattgtaggtaaaattgttgatgcggcg
cgcgcgcgtgatgctgcacgtaaagcacgggaaatgactcgccgtaaaggtgcgcttgat
attgccggtttacctggtaagctagcggactgtcaagaaaaagaccctgcattgtctgaa
ctctatatagtggaaggtgactcagcgggcggctctgcaaagcaggggcgtaaccgcaag
aaccaagcgatactgccgttaaaaggtaaaattcttaacgttgaaaaagcccgttttgac
aaaatgctgtcatcacaagaagtgggtacgttaattaccgctttaggttgtggtatcggc
cgcgaagaatataacccagacaaaacacggtatcacagcattattttgatgacggatgct
gacgttgacggttcacacattcgtaccttgctactcacgttcttttatcgccaaatgccg
gagttaattgagcgcggctatatctatattgctcaaccaccactgtataaagtgaaaaaa
ggcaaacaagagcaatatattaaagacgaagcggcattaactgaatatttaaccacgctg
gcgttagatgaagcgtcattgcatgtaaacccagatgcaccaggcattggcggtgaagca
ttagaaaagttagtgcgtcaataccacagagtgtcagcaaccattactcgcttaacgcgt
aaaataccgtttaatttgttaaacgagttaatttacgtgcctgctttagatgtggttcaa
gctaaaggtgccgcctatagtgagcagtgggctaaaacactggttgaccgcttagaagca
aaagaaggtgatggctcaagttatcgctatgacattcacgaagaccgtgagcgtcagtta
ttcttgcctaaagtaatcattcgtcagcatggtatagacaacgaatacttattacatcat
gacttcgttacgtcgcgtgattatttaagcattgccgagttaggtgatgaaattcgtgac
ctaatggaagcagatagctttgtgcgccgcggtgaaaaaaccaagccagttgaaaccttc
cttgaagcgttagagtggttgatgagtgaatctaagcgcggtctttatattcagcgctac
aaaggtttgggtgaaatgaaccctgagcaactatgggaaaccacgatggatccgaatacc
cgccgtatgctgcaggttaccattgaggatgccattggtgctgaccagctatttgcaacg
ctgatgggcgaccacgtagagccacgccgcgcctttattgaagagaacgcgttgtacgtc
gctaacttagacgtatag
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