Rheinheimera sp. D18: E0Z06_00230
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Entry
E0Z06_00230 CDS
T05923
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03420
Nucleotide excision repair
rhh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E0Z06_00230
03430 Mismatch repair
E0Z06_00230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_00230
Enzymes [BR:
rhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E0Z06_00230
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E0Z06_00230
MMR (mismatch excision repair)
Other MMR factors
E0Z06_00230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_22
PhoH
Motif
Other DBs
NCBI-ProteinID:
QBL08048
LinkDB
All DBs
Position
complement(50856..53027)
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AA seq
723 aa
AA seq
DB search
MDVSYLLDGLNDKQRDAVAASPQHMLVLAGAGSGKTRVLVHRLAWLMQVERVAPFSLLAV
TFTNKASQEMRGRIESTIGVSLNNLWMGTFHGLSHRLLRAHYQEAGLPQGFQIIDSDDQY
RLVRRVLKALNLDEKHWPAKQIQWFINARKDDGQRPAMIDAAGDFSLQQMTKIYTAYQDM
CDRAGLVDFAEILLRSFELLKKNDEVRNHYQQRFRHILVDEFQDTNAIQYQWLRLFAGSH
AKVMIVGDDDQSIYGWRGARVENIQTFLKDFPDVATVRLEQNYRSTATILKAANAVIANN
SGRLGKDLWTDGAAGETISLYTAFNELDEARFIVGRINDWHKQGDRLSEAAILYRNNAQS
RVLEEALIQQGLNYRIYGGLRFYERQEIKDALAYLRLLNNRQDDAALERVINTPVRGIGD
TTLSKVREYARAQQQTMWQSLQQMLAQKQLTGRAATAIDNFMQLIERLHSDTLELPLHEQ
AEHVIKQSGLYAMYQAEKGEKAETRIENLNELVTACQNFDERRAEDMTPLAAFLSQAALE
AGEYQAEEHSDAVQLMTLHSAKGLEFPLVFVCGMEEGMFPSQQSGDDPTRLEEERRLCYV
GMTRAMKKLYLTHAESRRVYGQEQHHKPSRFIREIPAEYLDEIRLTTQVSRPTQFNRFGS
AASHVAFESTGFKLGQRVLHDKFGEGTVLNYEGTGSQSRIQVNFDGLGSKWLVTAYARLQ
AMD
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatcttacctgctagatgggttaaacgataaacaacgcgatgcggtggcggca
tcgccgcagcatatgctggtgctagctggtgctggcagtggtaaaacccgcgtgttggtg
catcgtttagcctggttaatgcaggtagagcgcgtagcgccatttagtttattagcggta
acctttaccaataaagcgtcgcaagaaatgcgtggccgtattgaaagcaccattggtgtt
agcttaaataacctatggatgggcacctttcatgggttgtcgcatcgtttactgcgggcg
cattatcaagaagctggcttaccgcagggctttcaaattatcgactcggacgatcagtat
cggctagtgcgccgggtgcttaaagcgctaaatttagatgaaaaacattggcctgctaaa
caaattcaatggtttataaatgcgcgtaaagatgacggccaacgcccagcaatgattgat
gccgccggtgatttcagcctacagcaaatgactaaaatttataccgcttatcaagatatg
tgtgaccgcgcgggtttagtcgatttcgcagaaattttgttacgcagctttgagttgtta
aagaagaatgacgaggtacgtaaccattatcaacagcggttccgccatattttagttgac
gagtttcaagataccaacgctattcaatatcagtggttgcgcttatttgctggttcacat
gctaaggtaatgattgtcggtgatgacgatcagtctatctacggctggcgtggtgctaga
gtagagaacattcaaaccttcctaaaagacttccccgatgtagcaacagtgcgcttagag
cagaactatcgctctactgctaccatcttaaaagcggccaatgcggtgatcgccaataac
agcgggcgcttaggtaaagacctatggactgatggcgctgcgggtgaaaccatttcgcta
tataccgcctttaacgagctagacgaagcgcgttttatcgtcggccggattaatgactgg
cataaacaaggcgatcgcttaagtgaagccgcaatcttataccgcaataacgcccaatca
cgggtattagaagaagcgttaattcaacaaggcttaaactatcgtatttatggcggctta
cgcttttatgagcgccaagaaattaaagacgccttagcctatctgcgtttattaaataac
cgccaagacgatgcggctttagagcgggttatcaatacaccagtgcgcggcattggcgac
accacattaagcaaagtgcgtgaatatgcgcgggctcaacagcaaaccatgtggcaaagc
ttacaacagatgcttgcacaaaagcagctaacgggtcgtgcggctacggccattgataac
tttatgcaactgattgaacggctacatagcgatacattagaattaccgctacatgaacag
gctgagcatgtcattaaacaatctggcttgtatgctatgtatcaggcagaaaaaggcgag
aaagccgaaacccgtatcgaaaacttaaacgagctagttaccgcctgccaaaactttgat
gaacgccgcgctgaagatatgacgcccctggcagcatttttgtcgcaggccgcgcttgag
gctggtgagtaccaagcagaagagcattcggacgcagtgcagttaatgacgcttcatagc
gccaaaggcttagagtttccgttagtgtttgtttgcggtatggaagaaggcatgtttcct
agccaacaaagtggtgatgaccctacgcgtttagaggaagagcgacggctctgttatgtt
ggcatgacccgggccatgaaaaagctgtatttaacccatgctgaaagccgccgagtatac
ggccaagaacagcaccataagccttcgcgctttattcgcgagatcccagccgaatattta
gacgaaattcgcttaaccactcaagtaagtcggccaactcaatttaatcgctttggtagc
gcagcatcacatgttgcttttgaaagtaccggctttaaacttggccagcgcgtattacac
gataaatttggcgaaggcacggtactcaattatgaaggcacgggcagccaatcacgtatt
caggtgaattttgatggcttaggcagtaagtggctagtgaccgcttatgcccgtttgcaa
gcgatggactaa
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