KEGG   Rheinheimera sp. D18: E0Z06_00490
Entry
E0Z06_00490       CDS       T05923                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rhh  Rheinheimera sp. D18
Pathway
rhh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E0Z06_00490 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhh03021]
    E0Z06_00490 (rho)
   03019 Messenger RNA biogenesis [BR:rhh03019]
    E0Z06_00490 (rho)
Transcription machinery [BR:rhh03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     E0Z06_00490 (rho)
Messenger RNA biogenesis [BR:rhh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     E0Z06_00490 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_22 OB_RNB AAA_25 S1CSD-TOTE-2 AAA G2BR
Other DBs
NCBI-ProteinID: QBL08094
LinkDB
Position
complement(105907..107172)
AA seq 421 aa
MHLTELKLKPISELVELAESMGQENMARLRKQDIIFAILKSHAKNGEEIFGAGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGLIRPPKEGERYFALLKVNEVN
FGRPEQARNKILFENLTPLHANSRLRMERGNGSREDITARVLDLAAPIGKGQRGLIVAPP
KAGKTILLQNIAQSIAANHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAERRVFPAIDF
NRSGTRREELLASADELQKMWILRKIIHPMDETDGIEFLIDRLLMTKTNDEFFDAMKRQK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcatttaacagaactgaaactaaagccaattagtgagctagttgaattggctgagtct
atgggccaagaaaatatggcccgcctgcgcaaacaggacattattttcgccatcttaaaa
tcacatgccaaaaacggcgaagaaatcttcggcgctggcgtgctggaaatcctgcaggac
ggtttcggttttctgcgctccggcgatagctcatacttagcaggaccggacgatatttat
gtatcgccaagtcaaattcgtcgttttaacttacgtactggtgacagtattgctggcctt
attcgcccacctaaagaaggtgagcgttattttgccctattaaaagttaatgaagttaac
tttggccggccagaacaagctcgtaacaaaattttatttgaaaacttaacgcctttacat
gccaattcacgcctgcgcatggagcgtggtaatggtagtcgtgaagatattactgctcgg
gtattagacctagcggcgccaataggcaaaggtcagcgcggcttaattgttgcaccacct
aaagccggtaaaaccatcttattacaaaacattgcgcaatcaatcgcggctaatcaccct
gactgtgtgttgatggtattgctaattgacgagcggccagaagaagttaccgaaatgcag
cgcttagttaaaggtgaagttattgcttctaccttcgacgagccagctagccggcacgtg
caagttgctgaaatggtaattgaaaaagccaagcgtttagttgagcataaaaaagacgtt
attattttgctcgattctattacccgtttagcccgtgcttacaataccgttattccaagc
tcaggcaaggtattaactggtggtgttgacgctaacgcgctacacaaaccaaagcgtttt
tttggtgcggcgcgtaatgtagaagaaggcggcagcttaacgattatcgcgaccgcttta
gtagataccggttcaaaaatggacgaggttatatacgaagagtttaaaggcaccggtaat
atggaactgcacttatcgcgcaaaattgctgagcgccgcgtgttcccagctatcgacttt
aaccgctcaggtacgcgtcgtgaagagctactagcctctgctgatgagctgcaaaaaatg
tggattttacgtaagatcatccatccaatggatgaaaccgatggtattgaattcttaatc
gatcggttattaatgactaaaaccaatgacgagttctttgatgccatgaagcggcaaaaa
agttaa

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