Rheinheimera sp. D18: E0Z06_03935
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Entry
E0Z06_03935 CDS
T05923
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
rhh
Rheinheimera sp. D18
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rhh03009
]
E0Z06_03935 (srmB)
Enzymes [BR:
rhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E0Z06_03935 (srmB)
Ribosome biogenesis [BR:
rhh03009
]
Prokaryotic type
rRNA helicases
E0Z06_03935 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBL08724
UniProt:
A0A4V1A6P5
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All DBs
Position
complement(823302..824525)
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AA seq
407 aa
AA seq
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MTTFADFQLDDDINRAISARGYVEPTLIQEMAIPLALEGKDILASAPTGTGKTLAFVLPA
IQYLLDFGRKDPGFARVLVMLPTRELAYQVYDEFKFFSQHTNLNVGVITGGINYGSHKDT
LEKNNDILVATPGRLTEYLDEESFQADEIEVLILDEADRMLDMGFIGEMNRIVLEARRRR
QTFLFSATLEGNNLERFAEKALKEPERVEAIPSRKEKAKILQWVHLADDAQHKLALLIHL
LKQEDVTKAIVFIKTRERLASLTGQLETAGLRCGWLQGEMPQDKRMQAVERFSSGRVNIL
LATDIAARGLDIDDISHVINFDMPRTADVYVHRIGRTGRAGKKGTAISLVEAHDMGILAK
VERYHEQKLKRRNIEGLRAKNKEANVPVKKKKPTKAAAKKLAKKTKK
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgacaacattcgcagattttcaactggacgacgatattaaccgcgcaattagtgctcgt
ggttatgtcgaacccacactgatccaggaaatggcgatcccattagcgctagaaggcaaa
gacatcttggccagcgcgcctaccggtaccggtaaaaccctagcctttgtgctacctgct
attcagtacttactggattttggccgtaaagacccagggttcgctagagtgttggttatg
ctaccaacgcgtgaattggcctatcaggtatatgacgagtttaagttttttagccagcac
accaatttaaacgtgggtgtaattactggtggcattaactacggcagccataaagacact
ttagagaaaaacaacgatattttagtcgccacccccggccgtttaaccgaatatttagac
gaagaaagctttcaagcagatgaaatcgaagtgcttattttagacgaagccgaccgcatg
ctagatatgggctttattggcgaaatgaaccgtatcgtgctagaagcacgccgccgccgg
caaacatttttgttttctgctacgttagaaggcaataatttagagcgttttgctgaaaaa
gcgctaaaagaaccggaacgagtcgaagctattccgtcacgtaaagaaaaagcgaaaatt
ctgcagtgggtgcacttagctgatgatgcccagcataaactggcacttttaattcatttg
ctaaaacaagaagatgttaccaaagctattgtgtttattaaaacccgtgaacgtttagcc
agcttaactggccagctagaaactgctggtttacgctgcggttggttgcaaggcgaaatg
ccgcaagataaacgcatgcaagcggtagagcgttttagttcgggtcgggttaatatttta
ttagctaccgacattgccgcccgcggtttagatattgacgatattagccacgttattaac
tttgatatgccgcgtaccgccgatgtatacgtacatcgcattggtcgtaccggtcgtgcg
ggcaaaaaaggcacggcaatttcgttagtagaagcacacgatatgggaattctggctaaa
gttgagcgttatcatgaacagaaactgaaacgccgtaacatagaaggtttaagagcaaaa
aacaaagaagccaacgtgccggtaaaaaagaaaaagccaactaaagcagcggccaaaaaa
ttagccaaaaaaaccaaaaaataa
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