Rheinheimera sp. D18: E0Z06_08105
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Entry
E0Z06_08105 CDS
T05923
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03030
DNA replication
rhh03430
Mismatch repair
rhh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E0Z06_08105 (holB)
03430 Mismatch repair
E0Z06_08105 (holB)
03440 Homologous recombination
E0Z06_08105 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhh03032
]
E0Z06_08105 (holB)
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_08105 (holB)
Enzymes [BR:
rhh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E0Z06_08105 (holB)
DNA replication proteins [BR:
rhh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E0Z06_08105 (holB)
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E0Z06_08105 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
Sigma54_activ_2
nSTAND3
TacA1
AAA_22
DNA_pol3_delta
Mg_chelatase
AAA_5
SPT23_MGA2_DBD
Sigma54_activat
Motif
Other DBs
NCBI-ProteinID:
QBL09472
LinkDB
All DBs
Position
complement(1713884..1714777)
Genome browser
AA seq
297 aa
AA seq
DB search
MPPWLVSYQQQFSQLLNTNQLAHGILLTGPEGIGKHLLANWLAASLLCTAQTKPCGICKS
CLLREAGNHSDLLIVDSSGTSIGVDAVRQLSQFMQGRAQQQQNKVVLLADASKLTEAAAN
ALLKTLEEPPQNSFLLLFSTSGSTLPATLLSRCQQWVIAAQYGDDIQRWLAQHSNRAVPD
FLLAYAAGGPLKALSLLESGEADQLHVTINSLTKFFSQQIVLADCVKQLEAISGLSQIIG
WLLRQQLLPSLIGHNPQRVLAIHQLYSRWCRDEIQILGQNKQLALSAFLIELKRLQG
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgccaccttggttagtatcttatcagcaacaatttagtcagctactaaacactaatcag
ttagcgcatggcattttacttactggtccagaaggtatcggtaaacacctattagccaac
tggctggcggcatctttactttgtactgcccaaaccaagccttgtggtatatgcaaaagt
tgtttattacgtgaagcgggcaaccattctgacttacttattgtcgacagctctggcaca
agcataggtgttgatgcggtgcgtcagcttagtcagtttatgcaaggtagggcgcagcag
cagcaaaataaggtagtattattagctgacgctagcaagttaaccgaagctgccgctaac
gcgttactaaaaaccttagaagagccaccgcaaaatagttttttactgttgtttagcacc
agtggtagcaccttgccggcaaccttgcttagccgctgccaacaatgggtaatagctgca
cagtatggcgacgatattcagcgctggttagcgcaacatagtaatcgcgcggtgcctgat
ttcttattagcttacgctgcaggtgggccgctaaaagccttaagtttattagagtctggt
gaagcggatcagttacacgtgactattaatagtttgacgaagttttttagccagcaaata
gtattagccgattgcgtaaaacagctagaggcaattagcggattaagccagattatcggt
tggctacttcgccaacaattattgcctagtttaattggccataatccgcaacgtgttcta
gcaatacatcagttgtatagccgctggtgtcgtgacgaaatacaaattttagggcagaat
aagcagcttgctttaagtgcgtttttaattgagttaaaacgactgcaaggttaa
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