Rheinheimera sp. D18: E0Z06_08430
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Entry
E0Z06_08430 CDS
T05923
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E0Z06_08430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_08430
Enzymes [BR:
rhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E0Z06_08430
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E0Z06_08430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBL09533
UniProt:
A0A4P6VQP2
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All DBs
Position
1779862..1783338
Genome browser
AA seq
1158 aa
AA seq
DB search
MDLISVLPQIKHNTDQLHWGNLQGAALPLAIAQLLQQQAAPYLLLVPDTPSALRLEQELS
VFFHNVECPILTLPDWETLPYDIFSPHQDIISQRLKTLYQLSRLKRGVVIVPVSTLLLRI
CHRDYLEQNSFLIKKGQQADLAAIKLQLAAVGYRSVDQVMEHGEFSARGSILDLYPMGAS
VPYRIDFFDNDVDGIRTFDPDNQRSQAQVDYIELLPAHEFPTDKAAIERFRMAYRERFAA
RNEKESLYQQVTHGILPAGIEYYLPLFTEKTATLFDYLPVDTRCLLLGDTEHSAERFWHE
LRRRYDDRAIDLLRPILLPNELYLSVDQLFGSLKAYSRIRLSQAALPERAGQGNALVTTL
ADLSVNHQLKNPLQALQQFIIQLKQQQGRALFFVESEGRRESLLQLLHKAGMRIAQFDDL
TAFSASKDDLGIVIGALEQGVLIEQPKLFALISENELFGQKISQRRRRKRSQQVSSDTVI
RNLAELNIGQPVVHLQHGIGRYQGLQLLDAAGISAEFVTIEYAGSSKLYVPVTSLHLLSR
YSGSDAEHAPLHKLGNDTWEKSRRKAAEKVRDVAAELLDVYAQRAAHKGYAFALDEGQYV
IFADSFPYEETPDQQDAIDAVLRDMQTPQPMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQ
VAILVPTTLLAQQHFENFKDRFANWPVRVEVLSRFVSSKEQKAILEDVANGKVDILIGTH
KLLQDDIKLHDLGLLIVDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMSMSGMR
DLSIIATPPARRLAVKTFVREYENGLIRESVMREILRGGQVYFLHNDVASIEKMASDLAE
LLPEAIIGIAHGQMRERELEQIMADFYHQRFNLLLCSTIIETGIDVPTANTIIINRADNF
GLAQLHQLRGRVGRSHHQAYAYLLTPPPKRLTKHAEKRLDAIASLEDLGAGFALATHDLE
IRGAGELLGDEQSGQIESVGFSLYMDMLEQAVNALKNGREPSLDAMLSQQTEIELRIPAL
LPESYIPDVNLRLSCYKKLASARNIDELDEVQVELIDRFGLLPDAAKNLVAISEFKLQAQ
TLGIRRIEASNKGGVVEFGEKTAVSPAYIIELIQKQSRVFKLEGGQKLRFNIVANDGAER
LSLIANMLSDFAKHRVQK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggatctgatctcagtattaccacaaattaagcataataccgaccaattgcattggggc
aatttacaaggtgctgccttgccgttagctattgcacaactattgcagcagcaagccgca
ccctatctgttattagtgccggatacacctagcgcgttgcgtttagaacaagaactcagc
gtgttttttcacaatgttgagtgtccaatcctcacgctgcctgattgggaaactctgccc
tacgatattttctcaccgcatcaagatattatttctcagcgcttaaaaacactgtaccaa
ttatcacggttaaagcgcggcgtagttattgtgccagtaagcacactgttgctgcgtatc
tgtcatcgcgattatttagagcaaaacagctttttaattaaaaaaggccaacaagcagat
ttagccgcaataaaattgcaattagcggctgttggttatcgcagcgttgaccaggtcatg
gaacatggcgagttttcagcccgcggttcaatacttgatctttatccaatgggtgcaagc
gtaccctatcgaatagacttttttgataacgacgttgatggtatccgtacctttgacccc
gataatcaacgtagccaagctcaagttgattatattgaattgctaccagcgcatgagttt
cccactgacaaagcggcaattgaacgttttcgcatggcgtatcgcgaacgctttgcggca
agaaatgaaaaagaatctttatatcagcaagttactcatggcatattgccagcaggtatt
gagtattatttaccgctatttactgaaaaaaccgcaaccttatttgattacttacctgtc
gatacccgctgtctattattaggcgataccgaacacagcgcggaacggttttggcacgaa
ttaagacgacgctacgacgacagagcaatagatttactgcggcctattttgctacccaac
gagctttacttatcggttgatcagttatttggcagcttaaaagcatacagccgcattcgt
ttaagccaagccgcgctgccagaacgtgcagggcaaggtaacgctctggtaacaacactg
gctgatcttagtgtcaatcatcaattaaaaaatccactacaagccttacaacaatttatt
attcagcttaaacagcagcaaggccgagccctattttttgttgaaagtgagggccgtcgc
gaaagtttgctgcagttgctgcacaaagctggaatgcgtattgcgcagtttgacgaccta
accgcgtttagtgccagtaaagacgatttaggtattgttattggcgccttagagcaaggc
gtgctaattgagcaaccaaaactatttgctctaattagtgaaaacgagctatttggtcaa
aaaattagccaacgccggcgccgtaaacgtagccaacaagtgtcaagcgacacggttatt
cgtaaccttgcagagctaaatattggccaaccggttgtccatttgcagcacggtattggc
cgctaccaagggctgcaattacttgatgctgcgggcattagcgctgagtttgttaccata
gaatatgccggctcaagcaagctctacgtgccggtaacctcgctacacttacttagtcgt
tatagtggtagcgatgcggaacacgcaccgttgcataaactgggtaacgatacctgggaa
aaatcacggcgcaaagctgccgaaaaagtacgtgatgtcgcggcagagttactggatgtg
tatgctcaacgcgccgcacataaaggctatgccttcgccttagacgagggccaatatgta
atatttgccgatagctttccgtacgaagaaacccctgatcaacaagatgccattgatgcg
gtgttacgcgatatgcaaacgccacaacccatggatcgcttagtgtgtggtgacgttggc
tttggtaaaactgaagttgccatgcgcgcagcttttgttgcggtcaatgatggcaagcag
gttgcaatactagtgccgaccacacttttggcgcaacaacactttgaaaactttaaagac
cgctttgcgaactggccagtgcgagtagaagtgctgtctcgttttgtcagcagtaaagag
caaaaagccattttagaagatgtggcaaacggtaaagtggatattttaattggcacgcat
aagctgttgcaggatgacattaaactgcatgatttaggtttacttattgtcgatgaagaa
caccgttttggcgttcggcaaaaagaaaagattaaagccctacgcgcgaatatcgacatc
ttaaccctcaccgctacgccaataccgcgtacgctaaatatgtccatgtcgggcatgcgt
gacctctctattattgccacgccaccagcacggcgtttagcagtgaaaacctttgttcgt
gaatacgaaaatggcttgatccgagaatcggtaatgcgcgagatattacgcggcggccag
gtatatttcttacataacgatgttgccagtattgaaaaaatggccagtgacctagcggaa
ttactacctgaagccattattggtattgcccacggtcaaatgcgcgagcgtgaacttgaa
caaattatggccgatttttatcatcagcgttttaatttgctgctgtgctctaccattatt
gaaaccggtatagatgtgcctactgccaatactattattattaatcgcgccgataatttt
ggtttagcacaactacatcagttacgtggccgtgttggccgctcgcaccatcaggcatat
gcttatttattaacacctccaccaaaacgtcttaccaaacatgccgaaaaacggctagat
gccattgccagcttagaagacttaggcgcaggttttgctttagctacccacgatttagaa
attcgtggtgccggtgaactcttaggtgatgagcaaagcggccaaatagaatctgtcggt
tttagcctgtatatggatatgttagagcaagcggtaaatgcattgaaaaacggccgagaa
cccagtttagatgctatgctcagccaacaaacagaaatagaattacgcatacccgcactg
ttgccagaaagctatatacccgatgttaacttgcggctatcttgctataaaaagctggca
tcagcacgtaatattgacgagctagacgaagtacaagtagagttaatcgaccgttttggt
ttactacccgatgcggcaaaaaacttagtcgctatttccgaatttaaattacaagcacaa
acgctgggtattcgtcgtatcgaagccagtaacaaaggcggtgtggtagaatttggcgaa
aaaacagccgtgtcgccagcctacataattgaattaattcaaaagcagtcaagggtattt
aaacttgagggtggacaaaagctacgttttaatatcgtcgcaaatgatggtgctgaacgc
ctaagcttaattgccaatatgctgtcggattttgccaaacatagggtacaaaaatga
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