Rheinheimera sp. D18: E0Z06_11135
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Entry
E0Z06_11135 CDS
T05923
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0Z06_11135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhh03019
]
E0Z06_11135
Enzymes [BR:
rhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E0Z06_11135
Messenger RNA biogenesis [BR:
rhh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E0Z06_11135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
Helicase_C_2
HEM4
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QBL10029
LinkDB
All DBs
Position
complement(2351817..2353067)
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AA seq
416 aa
AA seq
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MSFQSLALATPILRVLTEQGYTSPTPVQLQSIPVILAGKDVLAGAQTGTGKTAAFTLPLL
QQMLNAPKVVAASQVRVLVLTPTRELAQQVYDNVRKYSQYLTTRSAVFYGGVSIRPQYDD
AAQGLDILVATPGRLIDHLHQKTIDLSALEVLVLDEADRMLDMGFVVDIKRIMAKLPPKR
QTLLFSATYSTEIKQLADELLNCPQLIEVAATNATADSVQQLAYLVDRHRKRELLSHVIG
KNNWPQVLVFVRTKHGADRLAKQLEKDGLKSAAIHGDKSQGARTKALADFKAGKVRILVA
TDIAARGLDISELPYVVNYDLPQVAEDYVHRIGRTGRAGNTGVALTLITPEETKALQDIE
RIIQQVITATVLAGYEHDPSYVSPEQAQARNNSGVKKPVRRGNEKAKLRSKALGKG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttcaatctctcgcgttagctacgcctattttacgtgtgctgacagagcaaggc
tatacgtcgccaacgccagtgcagttgcaaagtataccggtaattttggccggtaaagat
gtgctggctggtgcgcaaaccggcactggtaaaactgccgctttcactttacctttgctg
caacaaatgctcaatgcgccaaaagtcgtagcagcaagccaagttcgggtattggtatta
acgcctacccgtgagttagcgcagcaagtgtatgacaatgtgcgtaaatatagccagtat
ttaaccacgcgctcagcggtgttttatggcggtgtatctattcggccacaatacgacgat
gcggcgcaagggctagatatcttggttgcaacgcctgggcgattgattgaccatttgcat
caaaaaaccatcgacttatcggcgcttgaagtattagtgctagatgaagccgaccgcatg
ctagatatgggctttgttgttgatataaaacggattatggccaagctgccgccaaaacgt
cagacgttgctgttctccgctacctattctactgagataaagcagctggctgatgaactg
ttaaattgcccgcagttaattgaagtggcggcaaccaatgccacggccgatagcgtacag
cagttggcgtatttagttgataggcatcgaaaacgtgaattattaagccatgtcattggt
aaaaataattggccgcaagtattagtgtttgttcgcactaagcatggcgctgatcgctta
gctaagcagctagagaaggacggtttaaaaagtgcagccattcatggcgataaaagccag
ggcgctcgtaccaaagccttagccgattttaaagccggtaaggtacgcattttggtggca
accgatattgccgcacgtggtttagatattagcgagctaccttatgtggtgaattacgac
ttgccgcaggtcgcggaggattatgtacaccgtattggtcgtaccggtagggcgggtaat
actggtgtagccttaacgctaattacacctgaagaaactaaagccttgcaagatattgag
cgcataattcagcaggtaattaccgccactgtgctggcaggctatgagcatgaccctagc
tatgtttcacctgagcaagctcaagcgagaaataatagtggtgttaaaaagccggttagg
cggggtaatgagaaagccaagctgcgaagcaaggctttaggtaaaggctaa
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