Rheinheimera sp. D18: E0Z06_13430
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Entry
E0Z06_13430 CDS
T05923
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
E0Z06_13430 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_13430 (recD)
Enzymes [BR:
rhh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
E0Z06_13430 (recD)
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E0Z06_13430 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
AAA_11
UvrD_C_2
Viral_helicase1
SH3_13
AAA_22
NAT10_TcmA_helicase
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_16
PIF1
AAA_7
T2SSE
NTPase_1
CbiA
UvrD_C
AAA_28
TrwB_AAD_bind
AAA_5
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QBL10457
LinkDB
All DBs
Position
complement(2853338..2855284)
Genome browser
AA seq
648 aa
AA seq
DB search
MPMQINLFNDGAPLAAPAVSQPSTSTLTELKQMQALLQRWVDRRWLRALDMQLPQTLNQL
ATEPQPLIWLLTALLCHQYGRGHSCILLSDLISDPDALLSLPPQNQFLQRFTDRPSNLLM
GLTRQDYQQALAASPWLQGEPAAPLVWLDNRLYLNRLYQAEQQVKQGIAARVEAVLPIAA
KVAQSLASLFTAATPSSATEPDWQKLACAMALQRRFAIITGGPGTGKTTTVVKLLALLQQ
GAAQPLNIKLAAPTGKAAVRLTESISGALAKLPEHLRHAIPTEVSTLHRLLGALPNRRSF
KHHADAPLSLDVLVVDEASMVDLEMMAALLNALPAQARLILLGDKDQLSSVEAGSVLGDL
CRGAELGGYQAGSLALLQPYSEQPLAEWAGAGSVLNQATVMLRHSHRFDAKSGIGQLAFA
VNRGDTKAIALFAQFTDIQLLAETKLAALKDTVVAGYRQYLSVLAADNSQRDVWAKAILG
CYSQFQLLSALRSGDWGVEGLNILIGKWLTAAGLINANQQWYAGRPVMMQRNNYSLGLMN
GDIGITLFDPLTGKLRVVFQLADGSIKWVLPSRLTDIETAFAMTVHKSQGSEFTHCCLVL
PPELSPILTRELLYTGITRAKQQLTLLCANTHIFQQTIAKRVTRSSGL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgccaatgcaaattaatttatttaatgacggcgcgccattagccgcgcctgcggttagc
cagcctagtactagcaccttaactgaactgaaacagatgcaagccttgttgcagcgctgg
gtagaccgacgctggctaagagccttagatatgcagctgccgcaaacgcttaatcaactc
gcaacggagccacaacctttaatctggttgctcacggcattactctgtcatcagtatggt
cggggccatagctgtattttactcagcgatcttatctctgatccggatgcgttattgagt
ttaccgccgcaaaatcagtttttgcagcgcttcaccgaccggccgtctaacctactaatg
ggtttaacacggcaagattatcagcaagcgttagctgctagcccttggttacaaggtgaa
cccgctgcccccttggtttggctggacaatcggttatatttaaaccgcttgtatcaagcc
gaacagcaagtaaaacaaggtattgccgcaagagtagaagcagtgttgccgatagcggcc
aaggtggcgcaaagcttagcaagcttatttaccgctgcgacacctagttctgcaaccgaa
cctgactggcaaaagctagcttgtgctatggcattgcagcggcgttttgccattattact
ggtgggccgggcacgggtaaaaccactacggtagtaaaactactagccttattacagcaa
ggggcagcgcaaccgttaaacataaaattagccgcgccaacgggcaaggctgcggtacgt
ttaacggagtctatcagtggtgctttagccaaattacccgaacatttacgccatgctatt
cctaccgaagtaagtaccttgcatcgtttgcttggcgctttacctaatcgacgcagtttt
aaacatcatgcagatgcaccgctaagcctagacgtgttggtggtagatgaagcctcaatg
gttgacttagaaatgatggctgcattactcaatgcgttaccggcacaggctaggttgata
ttacttggtgataaagatcagttatcttcggtagaggccggctcagtgctgggcgattta
tgccgaggtgctgagctcggcggctatcaagccggcagcttagctttattgcaaccttac
tctgagcagccattagcggagtgggccggtgcgggctcagtgcttaatcaagctacggta
atgctgcggcacagccataggtttgatgcaaaatcaggtatcggccaactggccttcgcg
gttaatcgcggcgataccaaggccatagcgttatttgcgcaatttactgatattcagcta
ttggctgagacaaaattagccgcgttaaaagatacggtggtagccggttatcgtcagtat
ttaagcgtattggctgccgataacagccagcgagatgtttgggcaaaagctattcttggc
tgctatagtcaatttcagttacttagcgctttacgcagcggtgactggggagttgaaggc
ttaaatatcttgatcggcaagtggttaacggccgcggggctaattaatgctaatcagcaa
tggtacgccgggcgccccgttatgatgcagcgcaataactatagcttaggcttaatgaat
ggcgatattggtatcaccttgttcgatccgctaaccggcaaattacgtgtcgtatttcag
cttgctgatggcagtataaagtgggtgttacccagccgattaactgacatagaaaccgca
tttgcgatgacagtacataaatcgcaaggttctgaatttactcactgttgtttagttttg
ccgcctgagcttagcccaattttaacgcgcgaactgctgtacaccggcattactcgcgct
aaacagcaacttaccttgttgtgtgcgaatacgcatatttttcaacaaactatcgctaag
cgagttactcgcagcagcgggctttaa
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