Rheinheimera sp. D18: E0Z06_13435
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Entry
E0Z06_13435 CDS
T05923
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
E0Z06_13435 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_13435 (recB)
Enzymes [BR:
rhh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
E0Z06_13435 (recB)
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E0Z06_13435 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
DUF3860
Motif
Other DBs
NCBI-ProteinID:
QBL10458
LinkDB
All DBs
Position
complement(2855268..2858966)
Genome browser
AA seq
1232 aa
AA seq
DB search
MSRVQQLDALTFPLHGNRLIEASAGTGKTYTLAALYLRLVLGHGQTAPADAAEPNNATAF
SHALTPPDILVVTFTRAATAELRDRIRARLVEAADAFRVGSSTDVILNGLLQSYNTAQYP
SCAGVLERAAQWMDEAAIFTIHGWCQRMLAEHAFDSGMAFGEQLSDDNQQLLHTLACDYW
RRFLYPLTDGQLLGELGNIAKSPEALLADIQPWLQADAVNMQFNANGKPLPAPLSPEQVA
APLAQWQQQMQQLCQQIQPLLQADVLQLLDDAFANSWLNGNKFKAPSWQAERQWWQAQLA
EPAQFNAHQAEFAKMVLKYSATNLAAAQKKGQPLVSHALFNQLDAVLELLNAKPQLAINV
RQHAALWLAAEFRQRKKQRAELDFNDLLLQLHQALKGEGGAVLAARIRSQYPVAMVDEFQ
DTDPIQFAIFRAIYPDVSSQTNALIMVGDPKQAIYSFRGADLYTYLQARSLTAGRHYSLS
KNFRSTKPLVDAVNQLFNQAELARGAFGFGLADTTPLPFINVAAQGKNTQLQQAGQSVPA
LNYWRIEANEGELKKGGYQTQMAEACANQITLLLQQAAAGNTGFVNESGKLSALQPSDIA
ILVRDRHEAALVRQQLSLRNVRSVYLSDNESIFQSAEASAVLYWLRACHQLEDDNLLRAA
LALPLCANTDGQLQHWLNDELAWEQLTEQIRDFRQIWRQKGVLAMISAWLHYFALPAKWL
AQDYGERCLTNVLHLAELLQSESAQRDGETGLIRWLNEQLDKGSANDEQQLRLESDQQLV
QVVTIHKSKGLQYNLVFLPFICGFKAAKKDRPQRYFDGEKMILDLTPDDAALEQAERGRL
LEDIRLLYVALTRPVYACWLGLAVFSEGNSKKSKLAQSALGYLLNLPPDCTNADLTAALA
GLPWQQQVMPAAHAGLVSAPLQQLTPALRLSTPLRRERWWIASYSALRTEGAMASTTDMP
SALAADTALDNLLQEESTEPLLHSEQQQSMHDFPRGAVPGTFLHQLLEDAQQQGFAHCDA
TFISGLLQQHLTRYNWQPWQPVLQPWLVQMLQVPLTGINQSLAQLQTVRAELEFWLQTEQ
VNVRKLDHYISQAILPGVPRPALLPDTLNGMLKGFIDLTLQAKDQRYWVLDYKSNWLGTN
NSDYNLENMQQALLARRYDVQAALYMLALHRLLKLRQPGYLAAPERSFGGAFYWFVRAPE
QGQLQLTAPFALLQQLDKLFSGQPVTDDANAN
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtgtgcagcagttagatgcgttaacttttccactgcacggcaaccggctaatt
gaagccagtgccggtacgggtaaaacctataccttggcggcactttatttacgtttagtg
cttggccatggtcaaactgcgcccgctgatgcggcagagccaaacaatgccacagcgttt
agccatgccttaacgccgccagatattttagtggttacctttacccgcgctgcaaccgca
gagctacgtgatcggatacgggcgcgcttagtcgaagccgctgacgcatttcgtgttggc
agcagcaccgacgtaattcttaatggcttattgcaaagctataacacagcgcaatatccg
tcttgcgctggtgtactagagcgtgccgcacagtggatggacgaagccgctatttttacc
attcatggctggtgtcagcgcatgttggcggaacatgcgttcgattccggtatggccttt
ggcgagcagcttagcgacgacaaccagcagttgttgcacacactagcctgtgactattgg
cggcggtttttatatccattaaccgacggccaattacttggtgagttaggtaatattgcc
aagtcgccagaagcgctactagcggatattcagccttggttgcaggccgatgcggtaaat
atgcagtttaatgctaacggtaaacccttgcctgcgccgcttagccccgaacaagttgcc
gcgccactagcgcagtggcaacagcaaatgcagcagctatgccagcagatacaacccttg
ttgcaagccgatgttttgcagttactcgacgatgcctttgctaatagttggctcaatggc
aataaatttaaagcgccaagctggcaagcagagcggcaatggtggcaagcgcagttagcc
gagcctgcgcagtttaatgctcatcaagccgagtttgccaaaatggtgcttaagtacagc
gctactaacttagcggcggcacaaaaaaaaggtcaaccgctagttagccatgcgttattt
aaccaactagatgcggtgcttgaattacttaatgccaagccacagttagcgattaatgtg
cgccagcatgcggcgctgtggttagcggctgaatttagacagcgaaaaaagcagcgcgcc
gagctcgattttaatgatctgttactgcagttgcatcaagcacttaaaggcgaaggcggt
gcggtattggccgccagaattcgtagccagtatccggtggcaatggtagatgagtttcaa
gataccgatccgatacagttcgcgatttttcgcgccatttatccagatgttagtagccaa
accaatgcgttaattatggttggcgatcccaaacaagctatttatagctttcgtggtgcc
gatttatatacttatttacaggcgcgcagcctaacggcagggcggcattacagtttaagt
aaaaactttcgctcaactaaaccgctagtcgatgcggttaatcagctatttaaccaagcg
gagctagcgcgcggggcctttggttttggtttggccgacaccaccccattgccgtttatt
aatgttgccgcacagggcaaaaacacgcagttacaacaagcagggcaaagtgtgcctgca
cttaattactggcgaattgaagctaacgagggcgagttaaaaaaaggcggctaccaaacg
caaatggccgaagcttgcgccaaccaaattaccttactactgcaacaagctgctgccggt
aacaccggctttgttaacgaaagcggtaagcttagtgcattgcaaccgtctgatattgcc
atcttagtgcgtgaccgccacgaagccgcattagtgcggcaacagcttagcctgcgcaat
gtgcgttcggtatatttatcagataacgagtctatttttcaaagtgctgaggccagcgct
gtgctgtattggttacgagcctgtcatcagttagaagatgacaatttactgcgcgcggcc
ttagcgctgccactctgtgctaataccgatggtcagctgcaacactggcttaatgacgag
ttagcgtgggagcaacttaccgagcaaattcgagattttcgacaaatttggcggcaaaaa
ggcgtgctagcgatgatcagtgcttggctgcattattttgccctgccagcaaaatggcta
gcgcaagattacggcgagcgctgcctaactaacgtattacatttagccgaattactgcaa
agcgaaagtgcgcaacgtgacggtgaaaccggtttaattcgctggctaaacgagcagcta
gacaaaggctcggccaatgacgagcaacaactgcgactagaaagcgatcagcaattagtg
caggtggtgaccattcataaaagtaagggtctgcaatataacctagtgtttctacccttt
atttgtggttttaaggcggcgaaaaaagatcgaccgcagcgctattttgatggcgaaaaa
atgatactcgatctcacgcccgacgatgcggcacttgaacaagctgagcgtggcaggtta
ctggaagatattcgtttattatacgtggcactaactcggccggtttatgcctgctggcta
ggcttagcggtatttagcgaaggtaatagcaaaaaatctaaactggcacaaagcgcgttg
ggctatttattaaatttaccgccagattgcactaatgccgatttaacggccgctttggcg
ggcctgccttggcaacaacaagttatgccagcggcacacgctgggctagtgagcgcacca
ctgcagcaacttacgccagcgctgcggctaagcacgccgctgcgacgtgagcgttggtgg
atagccagttattctgcactgcgcaccgaaggcgccatggccagcactactgatatgccc
tcggcactggccgcagatacggcgctagataacctattacaggaagaatctaccgagcca
ttactgcatagcgagcaacagcaaagtatgcatgatttccctcgcggcgctgtgccgggt
acgtttttacaccaattacttgaagatgcacagcagcagggttttgcgcattgtgacgcg
acctttattagcggcttattgcagcagcacctaacgcgctacaactggcaaccatggcag
ccggtattacagccttggttagtacaaatgctgcaagtaccattaaccggcattaaccaa
agcctagcgcagttacaaacggtgcgcgcggagctagagttttggttgcaaaccgagcaa
gttaatgtacgcaagcttgatcattatattagccaagctattttgcccggcgtgccaagg
ccagcgttgttacccgataccttaaatggcatgttaaaaggctttattgacttgacctta
caagctaaagaccaacgctattgggtactggattataaatcaaattggttaggtacaaat
aacagcgactataacctagagaacatgcaacaggcgctgctagcacggcgctatgacgtg
caagccgcgctatatatgctggcgctacataggttattaaagttgcgtcaacctggctat
ttagccgcgccagaacgttctttcggtggtgctttttattggtttgtgcgtgcgccagag
caaggccagctgcaacttacggcgccttttgccctgctacagcaattagataaactcttt
tccggccagccggtaacggacgatgccaatgcaaattaa
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