Rheinheimera sp. D18: E0Z06_13440
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Entry
E0Z06_13440 CDS
T05923
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
E0Z06_13440 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_13440 (recC)
Enzymes [BR:
rhh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
E0Z06_13440 (recC)
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E0Z06_13440 (recC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QBL10459
LinkDB
All DBs
Position
complement(2858963..2862388)
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AA seq
1141 aa
AA seq
DB search
MLQSGFVVIHSNQLETLRELLVQWISSHPISVLGTEEILVQSNGIAQWLKMALAETANNH
PGIAAGLQVELPNQFVWQLYRAVLGDSIPKSLPYDKNNLSWRILGLLPELSAEVFAPLQR
YLQDDNDGRKSYQLALRLADLLDQYQVYRADWLQSWRDGHDLLPNSKQQHVPVDQLWQPA
LWRLLQQQLASHSADNAYSSRADIHSTALSALRLGQLARPDLLPERIIVFGVSSLPQQTV
ELLAALGAQRQVLLTVLNPCRHFWGDISNVKDEMRGAQKRHQRKPGLPAQLDADALYLHA
PVLLASLGKQGRDYVSLLDQFDQPEQYQHWFNGRIDLFSEPSANVASLGLLAQLQQGMLE
LEAMPNPARLLAASDQSISFHIAHSRQREVEILQDNLIAAFAANPSLQPRDIIIMTPDIS
QYQSHVHAVFGRLAQDDPRFLPYTLADQSLRGSQPLLVALEYLLDLPTQRFALSEMSDLL
DVPAIQRRFNINPEALPQLRLWLSEAGVRWGLDAEQRAGLALGELDSNYSWMFGIERMLL
GFAMGDETPWQNCAPYAEVAGLAAAELGAVLQFIQQLKHWFSIISQAKAQSLLSWQQLML
SEHGLLLSLFDFADEQDQLIYSRLSDALAQLVSAAESGDFSGDISLPVLREAWLEQASQS
GLSQRFLAGSLTFSTLMPMRAIPFKRIYLLGLNDGDYPRTRMRDDFDLMAYDYRPGDRSR
RDDDRYLFLEALLSAREAVYISWVGRNIRNNSELPPSVLVNQLRDLLNSGWQTGTEQSVA
DSLSHTYPLQPFSAQYFNGSYATYAHEWQAAHQGSVLQSSLSEGVFAEGSEPLPLLSVRL
LDDFLANPCRHYLSQRFKTRFYRSELSGEDTEPFVLNTLQLYQLKMQLLDQLLIQPEFNL
EQAIAQLARQAQLPLALFGQIAGAQIVREAQVVFARYRASGITWQRREQALTLQLQPAGI
ALNDTLANLYQGDAGQQALILLRPTAVRDNGALRWHTLRGAWLQQLVANAQGEAVSIYQY
GLDDAVQLLPQTTGAAQQQLINLVQSWQSGLLQPLPLMPKTALCYLQTQDENKSREVFEG
GYKRAGERDNAPELTRYYPDFASLMAAGFTDWAQQVYGPLLQSNIAGEEATASNTNHRGK
P
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgctacagtccggttttgtggtgatccatagtaatcaacttgaaacactgcgcgaactt
ttagtgcagtggatcagcagccatccgatatcggtgttaggcactgaagaaatattggtg
caaagtaatggtattgcacagtggctaaaaatggccttagccgaaaccgccaataaccat
cctggcattgctgccggtttgcaagtagagctgcctaaccagtttgtctggcagctttat
cgcgccgtgttgggtgatagcattccaaaaagcttaccctatgataaaaacaacttaagt
tggcgtattctgggcttgttacccgagcttagcgctgaggtttttgcgccgctgcaacgt
tatttgcaggatgacaacgatggcagaaaaagctatcagctggcactgcgcttagccgat
ttactcgatcaatatcaggtgtatcgtgccgactggctgcaaagctggcgcgacggccac
gatttactgccaaacagcaagcaacaacacgtaccggtcgatcagttatggcaaccggca
ttatggcggctgttgcagcaacaactcgccagccatagcgcggacaatgcctattctagc
cgtgccgacattcatagtaccgcgcttagtgcgctacgcttaggccaattagctcggcca
gatttactgccagagcgcattattgtgtttggtgtgtcgtcattaccacagcaaacagta
gagctactggccgcattaggtgcgcagcgtcaggtgctattaaccgtacttaacccatgc
cggcatttttggggcgacattagcaacgttaaagatgaaatgcgtggtgcgcaaaaacgc
catcaacgtaaaccaggtttaccggcacagctcgatgccgatgcgttatatttacatgcc
ccagtgttactggctagcttaggtaagcaaggccgagattatgtaagcttgcttgaccaa
tttgatcaacccgagcaataccagcattggtttaatggccgtatcgacttattttctgag
cctagtgctaacgttgccagcctggggttactagctcagctgcaacaaggtatgttagag
ctagaagccatgcctaacccagcgagactgttagcggcgtcagatcagagtattagcttt
catattgcccatagtcgccagcgcgaagtggaaattttacaagataatttgattgccgcc
tttgctgctaaccccagcttgcaaccgcgcgatattattattatgacgcctgatattagc
cagtaccaaagccatgtgcatgccgtgtttggccgtttagcgcaagacgacccacgcttt
ttaccctataccttagctgatcaaagtctgcgcggcagccaacctttgttagtcgcactg
gaatatctgcttgatttgcccacacagcgctttgcgttaagtgaaatgagcgatctactc
gatgtgccagccatacaacggcgttttaatattaaccccgaagccttgccgcagttacgg
ctatggcttagtgaagcgggcgtgcgctgggggctagatgcagagcaacgcgccggttta
gcgttaggcgagctagatagcaactatagctggatgtttggtattgaacgtatgttgtta
ggttttgcaatgggtgatgaaaccccgtggcaaaattgtgcaccctacgcagaagtggca
ggtttagcggcggctgaacttggcgcagtgctgcaatttattcaacagctaaagcattgg
tttagcattattagtcaggctaaagcccaaagtttactcagctggcagcagctaatgtta
tcagagcacgggctgttgctaagcctgtttgattttgccgatgaacaagaccagctaatc
tatagccgcttaagtgacgcgctagcgcagttagttagcgcggccgaaagtggtgacttt
agcggcgatattagtttgccggtactgcgcgaagcgtggttagagcaagctagccaaagt
ggcttaagccagcgctttttagcgggcagcctaacgttttctacgctgatgccaatgcgg
gccattccgtttaaacgtatttatttattgggtttaaatgatggtgactaccctcgtacc
cgcatgcgcgacgactttgatttaatggcctatgattatcggcccggcgatcgttcacgg
cgcgatgatgaccgctatttgtttttagaagcactactaagcgcccgcgaagcggtttat
atcagctgggtagggcgcaatatacgcaataacagcgagctgccgcccagtgtattagta
aaccagctgcgcgatttacttaacagcggctggcaaaccggcactgagcaaagcgtcgcc
gatagcctaagccatacttatccattacagccgttttcggcgcagtactttaatggcagc
tatgcaacctatgcccatgaatggcaggcggcgcatcaaggtagcgtgctacaaagcagc
ttgtcagaaggtgtgtttgcagaaggcagcgaacccttaccgttactcagtgtgcgctta
ctcgatgattttttagctaacccctgtcggcactatttaagccaacgttttaaaacacgg
ttttatcgctcagaactgagcggcgaagataccgaaccctttgtgcttaataccttgcag
ttgtatcaattaaaaatgcagctgctcgatcagctgctaatacaacctgagtttaacctt
gaacaggctattgcccaactggcccgccaagcgcagttaccattggcattgtttggtcaa
atagctggggcacaaattgttcgtgaagcacaagtggtttttgcccgctatcgtgccagc
ggcattacttggcaacgccgcgaacaggcattaacactgcaattgcaacccgcgggcata
gcgctaaacgatacgttagctaacctatatcaaggtgatgctggccagcaggcgcttatt
ttactgcggccaacggcagtgcgcgataacggcgctttgcgttggcacacactgcgtggt
gcctggttgcagcagctggtggctaatgctcaaggcgaagccgtatccatttatcagtat
ggcttagacgacgccgtacaactattaccgcaaactactggcgcggctcaacagcaactt
attaacctagtacaaagctggcaaagcggtttgttacagcccttaccactgatgccaaaa
actgcgctgtgttatttacaaactcaagatgaaaacaaaagccgtgaagtatttgaaggc
ggttataagcgtgcaggcgaacgtgacaatgcgccagaacttacccgctattaccccgat
tttgctagcctaatggccgcaggttttaccgattgggcgcagcaagtttatggcccactg
ttgcaaagcaatattgcgggtgaagaggcaacagccagcaatactaaccacagaggtaag
ccatga
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