Rheinheimera sp. D18: E0Z06_13990
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Entry
E0Z06_13990 CDS
T05923
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E0Z06_13990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhh03021
]
E0Z06_13990
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_13990
Enzymes [BR:
rhh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E0Z06_13990
Transcription machinery [BR:
rhh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E0Z06_13990
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E0Z06_13990
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
QBL10553
LinkDB
All DBs
Position
complement(3000689..3001678)
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVGIEKINPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIDILLNLKGLAVRLEDKDEVTLTLTKKGAGPVTAGDIQHGDG
VVIVNPEHVICNLTGETEFSMRLKVERGRGYVPASARLSSDDDERPIGRLLLDASFSPVE
RIAYSVEAARVEQRTDLDKLIIDMETNGTVEPEEAIRRAATILAEQLEFFVELRDKSEPE
KREEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLVNKD
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtcaccgaattccttaagccgagattagttggtatcgaaaaaatcaac
ccaactcgtgccaaagttactttggaaccacttgagcgcggtttcgggcataccttgggc
aacgcgttgcgtcgtattttactttcgtcaatgccaggttgtgcagtgactgaagtagaa
atagacggcgttctccatgagtacagcgccaaagaaggtgtccaagaggatatcatcgat
attctgttgaaccttaaaggccttgccgttcgcctggaagacaaagatgaagtcactctg
actttgacgaagaaaggtgctggccctgtaacagctggtgacatccagcatggcgacggt
gtggttattgttaacccagagcacgttatttgcaaccttacaggtgaaactgaattcagt
atgcgccttaaagttgaacgtggccgcggctatgtgcctgcatcagcgcgtttgtcctca
gatgatgacgagcgtcctattggtcgtctgttacttgatgcctcttttagcccggtagag
cgtatagcctattcggttgaagcagcgcgtgttgaacagcgtaccgacttggacaaactg
atcatcgatatggagaccaacggcacagttgagccagaggaagccattcgccgtgcagca
acaattttagccgaacagctagaattcttcgtcgagttgcgcgacaagagcgaaccggaa
aaacgcgaagagaaaccggagtttgatccgattctgttacgtccggtcgatgatttggaa
ttaacagttcgttctgctaactgcttaaaggcagagcagattcagtacattggtgatctg
gttcagcgtaccgaagtggagttacttaaaactcctaacttaggtaaaaagtcgcttacc
gaaatcaaggacgtgctggcatcacgcggtttatcactaggcatgcgcttagagaattgg
ccgccagcaagcctggtaaacaaagactaa
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