Rheinheimera sp. D18: E0Z06_14155
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Entry
E0Z06_14155 CDS
T05923
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E0Z06_14155 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhh03021
]
E0Z06_14155 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_14155 (rpoC)
Enzymes [BR:
rhh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E0Z06_14155 (rpoC)
Transcription machinery [BR:
rhh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E0Z06_14155 (rpoC)
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E0Z06_14155 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QBL10584
UniProt:
A0A4V1A781
LinkDB
All DBs
Position
complement(3021353..3025534)
Genome browser
AA seq
1393 aa
AA seq
DB search
MKDLLKFLKQQTKTEEFDVIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTSLERRQMLTEEEYLDVLEEHGDEFEAKM
GAEAVLDILKGLDLPVEIKQMREELPTINSETKRKKISKRLKLMEAFHTSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREEGPVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGMMFKSAKEAEKAFRAD
CASLHAKVKVRITEVEIAEDGTRSENTAVRDTTVGRAILYSILPEGLAFDSINQAMGKKQ
ISKLLNGAYRRIGLKQTVILADQIMYTGFHYAMLSGVSVGINDMVIPDSKVDIINAAEAE
VAEIQDQFQQGLVTAGEKYNKVIDIWSTANEVLSKSMMENLSKEDVVDRDGNTVQQQSFN
SVYMMADSGARGSPAQIRQLAAMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEKDCGSDRGIIMKPLIEGGDVVEGLRERVL
GRVVIGDLVSPTTGEVLVADGTMLDEQLCDAIEQNSIDEVHVRSVITCQTDFGVCAKCYG
RDLARGHLINAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGTLKL
QNAKFVRNADNKIVITSRSAEVTVFDELGREKERYKLPYGSVLTTDDNAKITAGQIVANW
EPHSHPIIVERGAKVNHSDIDDTNTEVQQDDLTGLTRTVVKDLAKANAKEPKLILTMDDG
ALQEIRLPSFTSIEVTDGATVKAGEVLARIPQESSKTRDITGGLPRVADLFEARKPKDPA
ILAEISGVISFGKETKGKRRLLITPEQGDVHEEMIQKWRQVNVFEGERIEKGEIISEGPE
SAHDILRLRGIHHVASYIVNEVQDVYRLQGVKINDKHIETIIRQMLRKCLITHPGDSEFL
EGEQAEVARVNIANRELEAAGKMPAQYERSLLGITKASLSTDSFISAASFQETTRVLTEA
AVAGKKDELRGLKENVIVGRLIPAGTGFAFHQNRMRQRQRGNSVENVEPAMSSEMAEQAL
SDALNMNSSGKDE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacaacaaactaaaaccgaagagtttgatgttatt
cgtatcggtttatcttcgccagatatgatccgttcatggtcattcggtgaagtaaaaaag
ccagaaaccatcaactatcgtactttcaaaccagaacgtgacggtttgttctgtgcccgg
atctttggcccggtaaaagattacgaatgtttgtgtggcaaatataagcgcttaaagcac
cgcggtgttatttgcgaaaaatgtggtgttgaagttacgttaaccaaggtacgccgtgag
cgtatgggtcatattgaactggctagcccaaccgcgcatatttggttcttaaaatcgcta
ccaagccgtattggtttgttacttgatatgacattacgtgatatcgagcgcgtattatat
ttcgaaagctatgttgtaaccgaaccgggtatgacttctttagagcgtcgtcagatgcta
actgaagaagaatatctagacgtgttagaagagcacggcgatgagtttgaagctaagatg
ggtgctgaagcagtactagatatcttaaaaggcttagacttaccggttgaaattaaacaa
atgcgtgaagagttaccgactataaattcggaaaccaagcgtaaaaagatcagcaagcgt
ttaaagctaatggaagcattccacacctctggtaataagcctgagtggatgattatgacg
gtacttccggtattaccaccagatttacgtccattagtaccgctagatggcggccgtttt
gctacgtctgacttaaacgatttataccgtcgtgttattaaccgtaataaccgcttaaag
cgtttactagacttatctgcgcctgacattatcgttcgtaacgaaaagcgtatgttacaa
gaagcggttgatgcattgttagataacggtcgtcgtggccgtgccattactggctctaac
aaacgtccgttaaaatcgttagctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacttattgggtaaacgcgttgactattcaggccgttcggtaattaccgttggtccaacg
ttacgtttacaccagtgtggtctgccaaagaaaatggcactggaactgtttaaaccgttt
atctacggcaagttagaagcgcgtggtttagccacgacaattaaagccgctaagaaaatg
gttgagcgcgaagaaggcccagtatgggatgtgttagacgaagtaattcgtgaacacccc
gtactgttaaaccgtgcaccaacactgcaccgtttgggtattcaagcgtttgaaccggta
cttatcgaaggtaaagcgattcagttgcacccattagtgtgtgcggcctataacgccgac
ttcgacggtgaccaaatggcggttcacgtacctttgactattgaagcacagctagaagct
cgtgccttgatgatgtcaaccaacaacgtgttatcaccagctaacggtgagccaatcatt
gttccttcacaagacgttgtacttggtttgtactacatgacgcgtgaagcaattaatgct
aaaggcgagggcatgatgtttaagagcgcgaaagaagctgaaaaagccttccgtgccgac
tgtgctagcctgcatgctaaagtaaaagtgcgtatcactgaagttgaaatagctgaagat
ggtactcgcagtgaaaacactgcagtacgtgataccactgttggccgtgcaattttatat
tcaattctgccagaaggcttagcctttgacagtattaatcaggccatgggtaaaaagcag
atttctaagttgttaaacggtgcatatcgccgtatcggcttgaaacaaacggttattctt
gctgaccaaattatgtataccggcttccattatgcgatgctgtcaggcgtatcggttggt
attaacgatatggttatccctgattctaaagtcgatattattaatgcggctgaagctgaa
gttgctgaaattcaagaccagttccaacaaggtctagttacagcgggtgagaagtacaac
aaagttatcgatatttggtctacagctaacgaagtattatcaaaatcgatgatggaaaac
ctgtctaaagaagacgtggtagaccgtgatggcaatacggtgcaacagcagtcatttaac
tctgtttacatgatggccgactctggcgctcgtggttcaccagcgcagatccgtcagcta
gcagcaatgcgtggtctgatggcgaaaccagatggttctatcatcgaaacgccaatcacg
gctaacttccgtgaaggcttaagcgtattgcaatactttatttctacgcacggtgcgcgt
aaaggtcttgccgataccgcacttaaaaccgctaactcgggttacttaacgcgtcgttta
gttgacgttgcccaagatttagtcgttaccgaaaaagactgtggctcagaccgtggcatt
atcatgaaaccgctaattgaaggtggtgacgtggtagaaggcttacgtgagcgcgtactt
ggccgagtagtgattggcgatttagtatcgccaactacaggtgaagtgttagtagctgac
ggcaccatgttagatgagcagttgtgtgacgcgatagaacaaaactctatcgacgaagta
cacgtacgttcagtaattacctgtcaaactgactttggtgtatgcgctaagtgttatggt
cgtgacctagcacgtggccacttaatcaacgccggtgaagccgtgggtgttattgctgct
caatcaatcggtgagccaggtacacagctaacaatgcgtacgttccacattggtggtgcc
gcatcgcgagcatcagcagagaacagcgtacaggttaaaacagccggtaccttaaaactg
caaaatgctaagtttgtacgtaatgcagataacaaaattgttattacttcacgttcagct
gaagtaacggtatttgatgagctaggtcgtgaaaaagagcgttataaactgccatacggt
tcagtattaacgaccgacgacaacgcaaaaattactgcaggtcaaattgttgcaaactgg
gaaccgcattcacacccaattattgttgagcgtggcgctaaagttaaccatagcgatatt
gatgacactaacaccgaagtacagcaggatgacctaacaggcctaacgcgtactgtagta
aaagatttggctaaggctaacgctaaagaaccaaaacttattcttactatggacgatggc
gccttacaggaaattcgtttaccaagcttcaccagtattgaagttactgacggcgcaacg
gtaaaagcgggtgaagtgttagcgcgtattcctcaggaaagttcgaaaacacgtgacatc
accggtggtttaccgcgcgtagcggatttatttgaagcccgtaaaccgaaagatcctgct
attttggcagagatttctggtgttattagcttcggtaaagaaaccaaaggtaaacgtcgc
ttgttaatcacgcctgaacaaggtgatgtgcatgaagaaatgatccagaaatggcgccaa
gtaaacgtgttcgaaggtgagcgcattgaaaaaggtgaaattatttctgaaggtccagag
tcagcgcacgatatcttacgtttacgcggtatccaccatgttgctagctatattgttaac
gaagtacaagatgtttaccgtttacagggcgtaaaaattaacgataagcacattgaaacg
attattcgtcaaatgctgcgtaagtgcttaattacacacccaggcgatagtgaattcttg
gaaggtgaacaggccgaagtggcgcgcgttaacattgctaaccgcgagctagaagctgca
ggcaaaatgccagctcagtacgagcgttcattactaggtattactaaagcgtcgctgtcg
accgattcatttatttcggcagcctcgttccaagagaccacacgtgttctaactgaagct
gcagtagcaggcaagaaagacgaactgcgtggtctgaaagaaaacgttattgttggccgt
ttgatccctgccggtactggttttgcgttccatcaaaaccgtatgcgtcagcgtcagcgt
ggcaatagtgtcgaaaacgtcgaaccagcaatgagttcagaaatggcagagcaagcattg
tctgatgctctgaatatgaattcatctggtaaagacgagtaa
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