Rheinheimera sp. D18: E0Z06_15250
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Entry
E0Z06_15250 CDS
T05923
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E0Z06_15250 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_15250 (uvrA)
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E0Z06_15250 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E0Z06_15250 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_21
AAA_23
nSTAND1
RsgA_GTPase
nSTAND3
AAA_25
NACHT
DnaJ_CXXCXGXG
cobW
Viral_helicase1
DUF2972
Motif
Other DBs
NCBI-ProteinID:
QBL10776
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All DBs
Position
3240094..3242916
Genome browser
AA seq
940 aa
AA seq
DB search
MDKIDIRGARTHNLKNISLVIPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC
PTHDLPLAAQTISEMVDKVTTFAEGTKLMVLAPVVQERKGEHVKTLESLAAQGYIRARID
GEVCDLSDPPKLDLQKKHTIEVVIDRIKVRDDIKTRLAESFETALSLSGGVAKVAFMDDP
DAEELVFSANFACPSCGYSMHELEPRLFSFNNPAGACQSCDGLGVKQYFDANKVIVSDEL
SLAGGAIRGWDKRNFYYFQMLKSLADHYDFKLDVPFNALEKHQREAILRGSGNMVIDFKY
LNDRGDIVQRSHPFEGILPNMERRYRETESNSVREELSKYLAHQSCPSCNGTRLREEARH
VFIGKTNLPQIVELSIGDCMAFFQQLSLTGQRAQIAEKVLKEIQDRLSFLVNVGLNYLNL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNDRLLGTLKHLRDLGNT
VIVVEHDEDAVRIADHIIDIGPGAGVHGGHIVAQGTLAEVMAEPASLTGQYLSGSRKIEI
PQQRHKAADKWLEVLGATGNNLKNVDIAIPFGLMTCITGVSGSGKSTLINDTLFRVAHRV
LNKGEGDDPAAHREIKGLEHFDKVIDIDQSPIGRTPRSNAATYTGIFTAVRELFAGTQEA
RSRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDVCKSKRYNRETLEIKYK
GKNIHEVLDMTVEDALEYFKAIPAINRKLQTLTDVGLSYIKLGQSATTLSGGEAQRVKLA
RELSKRDTGKTLYILDEPTTGLHFYDIQQLLNVLHRLRDHGNSIVVIEHNLDVIKTADWI
IDLGPEGGSGGGEILIAGTPEQVAACETSYTGHYLKPLLA
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggataaaattgatattcggggtgcccgcacccacaatctgaaaaatatttctttagtt
attcctcgtaaccaattggttgttattacgggcttatctggttctggcaagtcgtcatta
gcctttgatacattatatgctgaaggccagcgtcggtatgttgaatcgctttcagcctat
gcgcggcagtttttaagtttgatggaaaaacccgatgttgatcatattgagggcttatcg
ccagccatttctatcgagcaaaaatcaacctcgcacaacccgcgctcgacggtgggtact
attaccgaaatttacgattacctgcgtttattgtttgcccgagtaggcgagccgcgctgc
ccaacccatgatttgccgctagccgcacaaactattagcgaaatggttgataaggtaacg
acctttgctgaaggtacaaaattaatggtgctggcccccgtagtacaagagcgtaaaggc
gagcacgttaaaaccttagaaagtcttgccgcacagggctatattcgtgcccgtattgac
ggtgaagtatgtgatttatctgatccacctaaattagatttacagaaaaaacacaccatt
gaagtggttattgaccgaattaaagtgcgtgatgatattaaaacccggttagccgaatcg
tttgaaaccgcattgagtttatccggcggcgtggccaaggtagcctttatggacgaccct
gacgccgaagaattagtgttttcagctaattttgcctgcccaagttgtggctattccatg
catgaacttgaaccacgcctattttcgtttaataacccggccggtgcttgccaaagctgt
gatggccttggtgtaaaacaatattttgatgccaataaagtgattgttagtgacgagcta
agtttagccggtggcgcaattcgcggctgggacaagcgtaacttctattattttcagatg
ttaaaatcgctagcggatcattacgactttaaattagatgtgccatttaacgcgttagaa
aaacaccaacgcgaggccattttacgcggcagcggcaatatggtaatcgactttaaatac
ctaaatgaccgtggcgatattgtacaacgtagccacccgtttgaaggcattttgccaaat
atggaacggcgttaccgtgagactgaatctaattcagtacgcgaagagcttagtaagtac
cttgcccatcaatcttgccctagctgcaacggcactcggctgcgcgaagaagctcggcac
gtatttattggcaaaactaatctaccgcaaattgttgaattgtcgattggcgattgcatg
gcgtttttccagcaactaagcctaacaggacaacgtgcacagatagccgaaaaggtacta
aaagaaattcaagaccggctgagctttttggttaacgttgggcttaactacttaaacctg
tcacgcagcgccgaaaccttatctggcggtgaagcacagcgcattcggttagccagccag
attggcgctggtttagtcggcgtaatgtatgtgttagatgaaccctctattggtttgcac
caacgtgataacgaccgcttgttaggcacgcttaagcacttacgcgatctgggtaacacc
gtaattgtggtagagcacgatgaagatgcagtacgcattgctgaccacatcattgatatt
ggcccaggcgccggcgtgcatggtggccatattgttgctcagggcaccttagccgaggtt
atggcagagcctgcttcgctaactggtcagtacttatccggcagtcgaaaaattgaaata
ccacaacaacgacataaggcggctgataaatggttagaagtattaggtgcaacgggtaac
aatttaaagaatgttgatattgccattccgtttggcctaatgacctgcattaccggcgtg
tcgggttcgggtaaatctacattaattaacgataccttatttcgcgtggcacatcgggtg
ctaaataaaggtgaaggcgatgaccccgcagcacatcgtgagattaaaggtttagagcat
ttcgataaagttatcgatattgatcaaagccccattggccgaacaccacgctcaaacgcc
gctacctataccggtatttttaccgcagtacgcgagttgtttgctggcacgcaagaagcg
cgttcgcgcggttatcaggttggtcggtttagctttaacgtaaaaggtggccgctgcgaa
gcctgccaaggcgatggccttattaaagtagaaatgcactttttacccgacgtctatgtg
ccgtgcgatgtatgcaaaagtaagcgttacaaccgtgaaacactggaaataaaatacaaa
ggtaaaaatattcacgaagtactggatatgacggttgaagatgcactggagtactttaag
gctattcccgccattaaccgcaaactgcaaaccttaaccgatgtaggcttaagctatatt
aagttgggccaatcggcgaccacgttatcaggcggtgaagcacagcgggttaaattagcg
cgcgaactaagcaaacgcgacaccggtaaaacactgtatattttagatgagcctaccacc
ggcttacacttttacgatattcagcaattacttaacgtattacatcgcttgcgtgatcac
ggcaacagcattgtggttattgagcataatttagatgtgattaaaaccgccgactggatt
atcgacttaggcccagaaggtggtagtggcggcggtgaaatattaattgccggtacacca
gagcaggttgcagcttgcgaaacctcttatactggccattatttaaaaccgttattagcc
taa
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