Rheinheimera sp. D18: E0Z06_15480
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Entry
E0Z06_15480 CDS
T05923
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0Z06_15480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhh03019
]
E0Z06_15480
03009 Ribosome biogenesis [BR:
rhh03009
]
E0Z06_15480
Enzymes [BR:
rhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E0Z06_15480
Messenger RNA biogenesis [BR:
rhh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E0Z06_15480
Ribosome biogenesis [BR:
rhh03009
]
Prokaryotic type
rRNA helicases
E0Z06_15480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
P-loop_SecA
AAA_22
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QBL10969
UniProt:
A0A4P6VXM8
LinkDB
All DBs
Position
3295178..3296968
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AA seq
596 aa
AA seq
DB search
MSFAQLMLPEALIRAVTELGYESPSPIQAAAIPKLLAGEDVLGQAQTGTGKTGAFALPLL
ARLDPAQNDPQILVLAPTRELAIQVAEAFQAYARYMPAFHVLPLYGGQSYTNQLKSLKRG
SQVIVGTPGRILDHLERGTLKLDKLRAIVLDEADEMLRMGFIDDVQTIMDATPAGRQVAM
FSATMPAPIRAIAQKHLKNAEEIKIASKTSTVERIKQSYVMLDGNQKLDALTRLLEGEEY
DASIVFVRTKSATEEIAEKLGARGYAVACLNGDMNQAHRELTIRKMKANQLDIIVATDVA
ARGLDVERISLVVNYDIPYDSEAYVHRIGRTGRAGREGKAILFVSPRERRLLRTIEHSTK
QPIEQMSLPTGQVIEQRRIESFREQLAETVETQNLAFFQGLINDWREKIDATDGDIAAAL
LYLAQKEQPLNVANLFPAIREPHARGEREDRPRRERSDRPERTERGERSDRPDRGPRVKR
EMKGDYQTYRIEVGKEHGVRAGDIVGAIANEANIDSQFIGNIKLFDHFSTVELPATIPNE
VFQHLKKVYVRKQKLNICVDTGSAPVGERRSSAPASTSGAGPRPGAAPRAPRKPKD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatttgcccagctaatgctgcctgaagcacttattcgtgctgttactgaacttggc
tatgaatcgccgtcgcctattcaggctgctgctatccctaaacttttagctggcgaagat
gtattaggtcaagcgcaaacaggtactggtaaaaccggtgcttttgctttaccactatta
gctaggttagatcctgcacaaaacgacccacaaattttagtgttagcgccaactcgcgaa
cttgcaattcaggtagctgaagcatttcaagcttatgcgcgttacatgccagcatttcat
gttctgccgttatatggtggccaaagttataccaaccagttgaaatcacttaaacgtggc
tctcaagttattgttggtacaccaggtcgtattcttgaccatttagaacgtggcacatta
aagctagataagctgcgtgctatcgtgttggatgaagccgatgaaatgttacgcatgggc
tttatcgatgatgtgcaaactattatggacgcgacaccagcgggccgtcaggttgcaatg
ttttctgcaaccatgcccgcgccgatccgcgctattgcccaaaagcatttaaaaaatgct
gaagaaattaaaatagcatcaaaaacgagtaccgttgaacgcatcaaacaaagctatgta
atgttagatggcaatcaaaagcttgacgcattaacgcgcttgttagaaggcgaagaatac
gatgcaagtatcgtgtttgtgcgtactaaaagcgctacagaagaaattgctgaaaagctg
ggtgcccgtggttatgccgtagcctgtttaaatggcgatatgaaccaagcgcaccgcgaa
ttaaccattcgtaaaatgaaagcaaaccagttagatattattgttgctactgatgttgca
gcacgcggattagacgttgaacgtattagcttagtagtaaactacgatattccttatgac
agtgaggcttatgtgcaccgtattggtcgtacaggccgtgccggtcgtgaaggtaaagca
atattatttgtgtcgcctcgcgaacgtcgtttattgcgtactatcgaacattcaactaaa
cagcctattgagcaaatgtcactgcctacaggtcaggttattgaacagcgtcgtattgaa
tctttccgtgagcaattagccgaaacggttgaaacgcaaaatttagcattcttccaaggt
cttattaacgactggcgtgaaaaaattgacgctaccgatggtgatattgccgcagcatta
ctgtatttagcgcaaaaagaacagccacttaatgttgctaatttgttcccagcaattcgc
gaaccccatgctcgcggtgagcgtgaagatcggccacgtcgtgaacgtagtgatcgtcct
gagcgcaccgaacgtggtgagcgtagcgaccgcccagatcgcggcccacgggttaagcgc
gaaatgaaaggtgattaccaaacttaccgtattgaggtaggtaaagagcacggtgtgcgc
gcgggcgatattgttggcgctattgccaacgaagcaaatatcgacagccagtttattggt
aacattaaattgtttgatcatttcagtacggtagaattgccagcaacaatacctaatgaa
gtttttcagcatctgaaaaaagtgtatgtgcgtaagcaaaagctgaatatttgtgttgat
acaggttcggctccagtaggtgaacgtcgctcatctgcaccagcttctacatctggtgcg
ggcccgcgtccaggtgcagcaccacgcgcaccacgtaagccaaaagattaa
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