Sinorhizobium fredii NGR234: NGR_a01260
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Entry
NGR_a01260 CDS
T00888
Symbol
nifA
Name
(GenBank) Sigma54-dependent transcription activator NifA; required for symbiotic nitrogen fixation
KO
K02584
Nif-specific regulatory protein
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NGR_a01260 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rhi03000
]
NGR_a01260 (nifA)
Transcription factors [BR:
rhi03000
]
Prokaryotic type
Helix-turn-helix
Other families
NGR_a01260 (nifA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
AAA_5
AAA_2
GAF_2
Mg_chelatase
AAA
MCM
GAF_3
AAA_30
AAA_16
BrxC_BrxD
AAA_3
Motif
Other DBs
NCBI-ProteinID:
AAB91886
UniProt:
Q53206
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Position
pNGR234a:154853..156637
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AA seq
594 aa
AA seq
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MQAQALDNVSKAAFSRREPRAVRTTLKVFPRKNWLDECMTELSPKTMHKRDLGCSGLYRI
SKVLITSASLEIKLANVINTLPALLPMRRGAIVVVGAEGEPETTATFGVEPPSSGARHIA
AKAAIDRIVAKGAPLVVPDTCKSELFQDELQSIVSGTGQVTFIGVPMKADQETLGTLWID
RAKDGAATRTQFEEEVRFLSMVANLAARAVRLNGHESRDSRPIGEEGDRKISGGDKELPE
PTRQRPTRIDWIVGESPALRQVVESVKVVAQTNSAVLLRGESGTGKEFFAKAIHELSPRR
KKPFVKLNCAALSAGVLESELFGHEKGAFTGAISQRAGRFELADGGTLLLDEIGEISPAF
QAKLLRVLQEGELERVGGTKTLKVDVRLICATNKDLETAVAEGEFRADLYYRINVVPLFL
PPLRERNGDIPRLAKVFLDRFNRENNRNLEFTPAALEILSRCKFPGNVRELENCVRRTAT
LARSATIVPSDFSCQNDQCFSSMLGKTADRPLGSHSLNGLAMSKRLPVESPASLGYPAGP
GGLTVAPHLSDRELLISAMEKAGWVQAKAARILGLTPRQVGYALRRHHIQVKKI
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcgcaagcacttgataatgtcagcaaggcggcattttctcgtagggagccaagg
gccgttcgtacgacgctcaaggtgtttcctcgtaagaattggctcgatgagtgtatgact
gaattatcccctaaaaccatgcacaaacgggacttggggtgcagcggtctctatcggata
tcgaaggttttgatcacttcagccagcctcgagatcaagcttgccaatgtgattaacacc
ctccccgcacttttgccaatgcggcgcggcgcaatcgtcgttgttggcgctgaaggagag
cccgagacaactgcgacgttcggggttgagcctccatcatcaggcgcgcgccacattgct
gcgaaggctgcaatagatagaatcgtcgcaaaaggtgcgccgctggtcgtaccggacact
tgcaagtcggaactgttccaggatgagcttcagagtatcgtgagcggcactggccaagtc
accttcattggtgtcccgatgaaggccgatcaagaaacgcttggaacattatggatcgac
cgcgccaaggatggcgcagccaccagaacacaatttgaggaagaggtgcgtttcctgtcg
atggtcgccaaccttgcggcacgagcggttcggctgaatggccacgagagccgcgatagt
cgaccgatcggcgaggagggcgatcgcaagattagtggaggcgacaaggaactgcctgaa
ccaacccgacaacggcctacgagaatcgactggattgtcggggaaagccccgcactcagg
caagtggttgaaagcgtcaaagtcgttgcacaaaccaactctgcggtgcttctcaggggc
gaaagcggcacaggcaaggaattctttgcaaaggcaatccacgagctttcacctcgcaga
aaaaagccgtttgtgaagttgaattgcgcggcactgtctgcaggcgtcctggaatcggaa
ctgtttgggcatgagaagggcgcctttacgggggccatctctcagcgcgcaggccgtttc
gaactggcggatggcgggacgctgttgctcgacgaaatcggcgagatctcgccggccttt
caagcgaaactgttgcgcgtcttgcaggaaggtgagcttgagcgagttggcggcacaaaa
acgctcaaggtggacgtccgactcatatgcgccaccaacaaggacctggagacggcggtg
gcggagggggagttccgggctgacctttattatcgcatcaatgtagtgcctctcttttta
ccgcctctcagggagcgaaatggagatattccacgccttgcgaaggttttcctcgaccgg
ttcaacagggaaaacaatcgcaatctcgaattcacgcctgcggcactcgagatcctgtca
agatgcaaatttcccggcaacgtccgagagcttgaaaactgcgtccgcaggaccgccact
ctcgcacgttcggcgacgattgttccatcagatttctcctgccagaatgaccagtgcttt
tcttcaatgctcgggaaaactgctgacagaccgcttggcagccattcgctcaatggattg
gccatgagcaaacgtttgccagtcgaatcgccggccagtctcggttaccccgccggccct
ggcggcttaacggtggcaccacatctatcggaccgcgagctgctaatcagcgcgatggag
aaggccggctgggttcaggcgaaggcagctcggatcctcggcctcacaccgcggcaagtc
ggctatgctttacggcggcatcatatacaggtgaaaaaaatctag
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