Sinorhizobium fredii NGR234: NGR_b03530
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Entry
NGR_b03530 CDS
T00888
Name
(GenBank) putative LysA, diaminopimelate decarboxylase LysA
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi00300
Lysine biosynthesis
rhi00470
D-Amino acid metabolism
rhi01100
Metabolic pathways
rhi01110
Biosynthesis of secondary metabolites
rhi01120
Microbial metabolism in diverse environments
rhi01230
Biosynthesis of amino acids
Module
rhi_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
NGR_b03530
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
NGR_b03530
Enzymes [BR:
rhi01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
NGR_b03530
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Ala_racemase_N
Orn_DAP_Arg_deC
Motif
Other DBs
NCBI-ProteinID:
ACP21817
UniProt:
Q6W1T9
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All DBs
Position
pNGR234b:353383..354756
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AA seq
457 aa
AA seq
DB search
MTLHGHKIGFGLPPILRSATADLLTRHGPLLLDWVTCYGSPLNLVWPDALQKNLAALKGV
LTERRVGHAVYYGVKVNKSLGLMRAALSAGAGLDVSSLCELRDARRLGAEGVRLVATGPA
KTSAFHKELIDCSALISVDSPEELEDLIDGLPADAGPQPILLRLRPRDQSKSRFGMPGDA
VVHCLARLTAENRLRFDGLHFHLSGYRWETRVAALSEAADLITKARRMGFSPRMIDIGGG
LPIQYVDQVKYRAHLAAQAPEDYRTGKIPDSFYPYGGTLSPADWLHRLLEAEMSQGQSVA
GYLAREGLTLAMEPGRALTDQAAITVFRISRVKALGPDSHVIFVEGSSFSACETWFASEF
LVDPILVPVTRPAAQSPPIRAYLAGHSCLDEDVISNRWLTFPIAPQAGDLLVYANTGGYQ
MDLLENEFHRHPMPARLCVIDDAEGRATLVPDTIGEV
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgcatggtcacaagatcggctttggcctgccgcccatcttgcgatcggcgacg
gcagaccttctcacccgacacggtccccttcttctggactgggttacttgctatggctcg
cctctcaatctggtttggccggatgcgttgcaaaagaatcttgccgccttgaaaggcgtg
ctgacggagcgccgcgtcgggcatgcggtctattatggggtgaaggtcaacaaatcgctc
ggtctcatgcgggcagcgctcagcgcgggtgccgggctcgacgtttccagtctttgcgaa
cttcgcgacgcaaggcggctcggggccgagggtgtaaggctcgtggcgacgggaccggcg
aagacgagcgcttttcataaagagctgatcgattgcagcgcgctgatatcggtggattcg
ccggaagagctggaggatctcatcgacggtctgccggcagatgccggtccacagccgatc
ctcttgcgtttgcggccgagggaccagagcaagagccgcttcggcatgccaggcgacgcg
gtcgttcattgccttgctcgccttaccgctgaaaacaggttgcgtttcgacgggctgcat
ttccacctgagcggctatcgctgggagacgcgtgtcgcggcgctcagcgaagctgccgac
ctaattaccaaggcccggcggatgggattttctccgcgcatgatcgatatcggtggcggc
ctgcccatccaatatgtcgaccaggtcaaataccgggcacatctcgcggcgcaggcgccc
gaggactatcgcaccgggaaaataccggactccttctatccctatggtggcactctctcg
ccggccgattggctgcaccggctcctggaggcggaaatgagccaggggcaaagcgtagcc
ggctatctggcgcgtgagggcctcaccctcgcgatggagccgggccgcgccctgaccgac
caggcggcgatcaccgtcttccggatctcgcgggtgaaggcactcggtccggattcgcac
gtcatctttgtcgaaggcagcagcttcagcgcctgcgaaacctggttcgcctccgaattc
ctggtcgatccgattctcgtgccggtcacgaggccggccgctcaatcgccgccaatccgt
gcctatctggccggccatagctgcctggacgaagacgtcatcagcaacagatggctgacc
ttcccgattgcaccgcaggccggtgaccttctggtctacgccaacaccggcggctaccag
atggatctcctcgaaaacgagttccatcgccaccccatgcccgcccgcctctgcgtcatt
gacgacgcagaagggcgggccactctcgtccccgacactattggagaggtttag
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