Sinorhizobium fredii NGR234: NGR_b20480
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Entry
NGR_b20480 CDS
T00888
Name
(GenBank) Ku78, Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
KO
K10979
DNA end-binding protein Ku
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NGR_b20480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhi03400
]
NGR_b20480
DNA repair and recombination proteins [BR:
rhi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NGR_b20480
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GFIT
Motif
Pfam:
Ku
DUF6250
Choline_bind_2
SSFA2_C
Motif
Other DBs
NCBI-ProteinID:
ACP23495
UniProt:
C3KM59
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All DBs
Position
pNGR234b:2096949..2097833
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AA seq
294 aa
AA seq
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MAPRASWKGYLRLSLVSCPVRLYPATTTSERITFNQLHKDTHNRINMKPVDPELGLVERS
DLVKGYEYEDKKYIVIDEADLESVKIESNHTMNIEAFVDEGSVDVIYQDAPYYLAPDGAM
AEETFIVLREALRRSGKLAIARLVLSSRERVIAIGPRETGMFVCTLRNPNEVRGTAEYFG
NIPVGNAEPEMLQLAEALIQQKTTTFDPKNYEDRYEIALLQMIREKLKGHKPIIAAPPDR
GNVINLMDALKASLSQAKPPAKSKSKVEPAAKPAAKSAAAKPAAAKKTTTQKKA
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcacccagggcaagttggaagggttatctgaggctgagcctcgtgagctgtcctgta
cggctctatcccgccacgacgacgagcgaacgcattaccttcaatcaattgcacaaagac
acccacaaccggattaacatgaagccggttgacccggaactcggcctggtcgagcgatcc
gacctggtgaagggctatgaatacgaggacaagaaatacatcgtcatcgacgaggctgac
ctcgaaagcgtcaagatcgaatccaaccacacgatgaacatcgaggccttcgtcgacgaa
ggctcggtggacgtgatctaccaggatgcgccctattacctggcgccggacggcgcgatg
gccgaagaaactttcatcgtcttgcgcgaggccctgcggcggagcggcaagcttgccatc
gcccgccttgtgctgtcgagccgcgaacgggtgatcgccatcggtccgcgtgagaccggc
atgttcgtctgcacgctccgcaaccccaatgaagtgcgcggcacggccgaatactttggc
aatatcccggtcggcaatgccgagccggaaatgctgcaactcgccgaagccctcattcag
caaaagaccacgacctttgatccaaaaaactacgaggatcgctacgaaatcgccctgttg
cagatgatccgcgagaagctcaagggccacaagccgatcatcgcggccccgcctgaccgc
ggcaacgtcatcaacctgatggacgcattgaaggcaagcctgtcgcaggcgaagccgccg
gcgaaaagcaagagcaaggtggagccggccgcaaaacctgcagcgaagagtgccgccgcc
aaacccgccgcggcaaagaagaccaccacgcagaagaaggcctga
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