Sinorhizobium fredii NGR234: NGR_c04980
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Entry
NGR_c04980 CDS
T00888
Symbol
xseB
Name
(GenBank) exodeoxyribonuclease VII small subunit
KO
K03602
exodeoxyribonuclease VII small subunit [EC:
3.1.11.6
]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NGR_c04980 (xseB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhi03400
]
NGR_c04980 (xseB)
Enzymes [BR:
rhi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
NGR_c04980 (xseB)
DNA repair and recombination proteins [BR:
rhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NGR_c04980 (xseB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_S
DUF1184
PhdYeFM_antitox
RL10P_insert
DUF3456
Motif
Other DBs
NCBI-ProteinID:
ACP24294
UniProt:
C3MHG6
LinkDB
All DBs
Position
complement(556026..556280)
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AA seq
84 aa
AA seq
DB search
MNNNNTQPDVSALSFEQAVEELERIVSALERGDVALDKSIEIYERGEALKKHCETLLKAA
EDRIEKIRLDRNGKPQAVEPLDAE
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaatacgcagccggacgtctccgccctctccttcgagcaggcggtcgag
gagctggaacggatcgtctccgcgctcgagcgcggcgacgtggcgctcgacaagtcgatc
gaaatctatgagcgcggcgaagcgctgaagaagcattgcgagacgctgctgaaggcggcc
gaggaccggatcgagaaaattcgcctcgaccgcaacggcaaaccgcaagcggtggagccg
ctcgacgcggaatag
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