Sinorhizobium fredii NGR234: NGR_c05820
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Entry
NGR_c05820 CDS
T00888
Name
(GenBank) superfamily II DNA/RNA helicase and SNF2 family-related protein
Organism
rhi
Sinorhizobium fredii NGR234
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ACP24375
UniProt:
C3MI27
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Position
635504..638722
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AA seq
1072 aa
AA seq
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MIKFDFRADSQAAYVTVAPEKRGWLAAFRRREAVDLRALTKAERATALAVARLRHLDPLG
ELHQIAENGLVIRHPLVAQLDSNTASALGLPRLMTGYVFKAKLAGTVGSSDFGIDWWWEK
NGRTVALPLQGAFLGSAAQMMRLPSQIYSAIEQANALKERSSVTDHWLELGKFRRLFDAS
DEPASRENLEGFLRNLSVVTCDSVGIAFDAEDETKFFPLPFVGSPEPDPDRDTADVAALK
GRELNEFRDGAIRRGAQPAYRVADGKFLIVDRSAAPVLDAIARNAKADEAGRRAFIADAG
RIIQSAIERQMEDDGRITALMSPAARAERVEQETSRVWIETTEWVSRVLGVAKWQVTEIE
GMQSSGTKWLNSSIDAELADRLSQIEDEQLAEVVEALRTAIAEHTPLITHEVGDIPAIAE
VLEALSRRLAEYLRQKPIDAPSVSLDAYLPVTHDNFWEVDFKAAVRPRGNEAEFKFPEAV
RTALQPHQLTSLKWQVAAWQAGIPGVLNADEQGLGKTLQTLSFVAWLRAEMDAGAVPHRP
FLVVAPTSLLLNWEAEIDRHLSAQALGIPVRLYGSHLAEFKKEGLSGQDIREGEALLDLD
KIRSLENGAPVVITTYQTLANFAISLMDLQCAVAIFDEIQFVKNPVTMRAKAAKSLNADF
RIGLTGTPIENATKDLWALMDQLFPGALGALAQFKRVFGLPTEENMSALHHALFSGQHER
PPLALRRLKTDAAPGLPTKVRILHPREMSEPQMLRYDEARRKGGMMLALLHHIRRISLHP
GLLEGETTEEFSASAARVDAAMDILRHIKSKGERALVFVENRDVQAWFAEVVRLEFNLDT
VMIINGDTTIDARKEITDRFQRHLTNDGGFDVLVLGPRAAGTGLTLTAANHVIHLSRWWN
PAVEEQCNDRTHRIGQTKPVTVHIPLAVHTRLGAGSFDCLLQRLMKRKRTIADRVLWPAE
ATESETRMLYDAVVEASDVEVGSEALELDGVLEGRTDLTAEMLDGNAIRIRPRRGGASIV
VSSGRTVPSSSIRSDTDAAVVSMQVHGVGKEMPVPHSRLTTGTLWPEFVLPE
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagtttgattttcgagccgatagccaagccgcgtacgtcaccgttgcgccggaa
aaaagaggatggcttgccgcattccggcgccgtgaggcggtcgatctgcgggctctgacg
aaggcggagcgcgccacagcgttggccgttgctcgcctgaggcatctggatccattgggt
gagctgcatcagatagccgagaatggtctcgttatccgccatccgctggtggcgcagctg
gactcgaacaccgcttcagctcttgggcttccccgtttgatgaccggttatgttttcaag
gcgaaacttgccgggaccgttggaagctctgacttcggcattgattggtggtgggaaaag
aacggtcggacggttgccttgccgcttcagggagcttttctcggctccgctgcgcagatg
atgcgactgccaagccagatctattccgccatcgagcaggcgaatgccctcaaggagcga
tcatcggttaccgatcattggctggaattggggaagttccgccgcctgtttgacgcgtcg
gatgaaccagcatcgcgggagaacctggaaggattcctgcgcaacctttcggtggttacc
tgtgactcggtcggtatcgcgttcgatgccgaagatgagacgaagttcttcccgcttcct
ttcgtcggttcgcctgaaccggatcccgacagagacaccgccgatgtcgccgccctcaaa
ggccgcgagctgaatgaatttcgtgacggggccattcgacgaggagctcagccggcctac
cgggttgccgacggcaagttcctgatagttgatcgctccgccgcacctgtccttgatgcc
atcgcaaggaatgcaaaggcagatgaagcggggcgacgcgcatttattgcagacgctggc
cggataatacaatcggcgatcgagcgtcagatggaagacgacgggcgcataaccgccctc
atgagcccggctgccagggcagaaagggtcgagcaggaaacttctcgagtgtggatcgag
accaccgaatgggtgtctcgcgtcctcggcgtcgccaaatggcaggtgacggaaatcgaa
gggatgcagagttcagggacgaaatggttgaattcctccatcgatgctgagctggccgat
cgtctttctcagatcgaggatgaacagctagcagaagtcgtcgaggccctccgtaccgca
atcgccgagcacacacctttgatcacgcacgaggttggcgacatacctgcgatcgccgaa
gtccttgaagcgctgtcgagacggttggctgagtacttgaggcagaagccaatcgatgca
ccttctgtttcgctggatgcatacctgccggtgacgcacgacaacttctgggaggtcgac
ttcaaggccgcggtacgcccgcggggaaacgaggcagagttcaagtttcccgaagccgtc
aggaccgcactgcagccccatcagctgacctcgctcaaatggcaggttgcggcttggcag
gcaggtattcccggcgttctgaacgccgatgagcaagggttgggaaaaacgcttcagacg
ctgtcattcgtggcatggctcagggctgagatggatgccggcgccgttccgcaccgacct
ttccttgttgtggctccaacgtcgctgcttctgaactgggaagcggagatagatcgacac
ctctccgctcaggctctcggaattccggtgcggttgtatggctcccatttggccgagttc
aaaaaggaaggtctctcggggcaagacatccgcgagggcgaagcattgctggacctggac
aagatccggtctctcgagaatggcgcgcccgttgtgataaccacctaccagacgctcgcg
aacttcgcgatcagcctgatggatctccaatgcgcggtggcgattttcgatgagatccag
ttcgtcaaaaacccggtgacaatgcgagccaaggcggcaaaatcgctcaatgcggatttc
cggatcggactgaccgggacaccgatcgagaacgcgaccaaagacctctgggcgttgatg
gaccaactcttccctggggcgctcggtgcattggcgcagttcaaacgggtcttcggtctc
cccacggaagagaatatgtcggcccttcaccacgctttgttctcagggcagcatgagcgt
ccgcccttagcgctcaggcgattgaagaccgatgccgcccctgggctgcccacaaaggtg
cggatcttgcatcctcgcgagatgtccgaacctcagatgctgagatacgacgaggctcgc
cgcaagggcggcatgatgctcgcgctccttcatcacatccggcggatatcgttgcatccc
ggtctgctggaaggcgaaaccacagaggagttcagcgcttcggcggcacgcgtcgacgcg
gcgatggacattctgcgtcatatcaaatcaaagggcgagcgtgctcttgtattcgtcgag
aaccgagatgtccaagcctggttcgccgaagttgtgcggttggaattcaatctcgacact
gtgatgatcatcaacggcgacacgaccatcgacgcccgtaaggaaatcaccgaccgcttc
caacgacacctaacgaacgacggtgggttcgacgtcctggtgcttggaccaagagccgca
ggcaccgggctgacactcaccgcagccaatcatgtcattcacctgagccgttggtggaac
cccgcagtcgaagagcagtgcaatgaccgcacccaccgcatcggtcaaacgaagcctgtt
acggttcatattccgctcgcagttcacacacggctgggcgcgggctctttcgactgtctt
ctgcagcgcctcatgaagcggaaacgtacgatcgcagatcgcgttctctggccagccgag
gccaccgagagcgagactaggatgctctacgacgcggtcgtcgaagcttcggatgtagag
gttgggagcgaagcgctggagttggatggcgtactcgagggcagaaccgacctgaccgcc
gagatgctggacgggaatgcaatccgcatacgtcctcggcgcggcggagcgtcaattgtc
gtctcgagtggccggactgtcccatcgagttccatccgttccgataccgatgccgccgtt
gtatcgatgcaggtgcatggggttggcaaggagatgccggtcccgcattccagactgacg
accggtacgctttggccagagttcgtcctgcctgagtaa
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